gucy1b3 (gucy1b3,LOC107714654,LOC107757623)


Basic Information

Item Value
gene id gucy1b3
gene name gucy1b3,LOC107714654,LOC107757623
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16765427 ~ 16798748 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232722.3
AGGCGGCAGCGAGCGCGAGGAGAATGgtgggttgccaggttgagaGCTGAGAGCGCCGCTGGAGCCCGGGGTCGCGTTTCTCCTTAGAGCGGAATATAAAGCAAaatgTACGGCTTCGTCAACCACGCTCTAGAGCTCCTGGTGCTGAGAAACTATGGCCCAGAGGTGTGGGAAGATATCAAGCGTGAGGCGCAGGTGGATGTTGAAGGACAGTTCCTGGTCAGAATTATCTATGAGGATGGAAAAACGTACGACCTCGTTTCGGCCGCCAGTAAAGTGCTCAAAATGGATGCTGGCGATATTCTGCAGATGTTTGGAAAGATGTTCTTTGAGTTCTGTCAGGAGTCCGGCTACGACACCATCCTGCGAGTTCTGGGCTCCAACGTTCGGGAATTCTTACAGaatctgGATGCCCTGCATGATCACCTGGGCACCATCTACCCGGGCATGAGGGCTCCCTCGTTCCGCTGCACCGACGCTGAGAAAGGGAACAACCTCATCCTGCACTATTACTCCGAGAGAGAGGGTCTGCAGGACATAGTCATCGGCATCATTAAAACCGTCGCCCAGCAGATCCACGGAACCGAGATCGAAATGAAGGTCATTCAGCAGAAGAGCGAGGAGTGTGACCACATTAAGTTCCTGATTGAGGAGAAGGACTCGGAGGAGGAGGCGTTCTATGAGGATCTGGACGGCTTTGAGGAGAACGGCACTCAGGAGACCCGGATCAGCCCATACACCTTCTGCAAGGCCTTCCCTTTCCACCTCATGTTCGACAAGGACCTCATGCTCACCCAGTGTGGAAACGCCATCTTCAGAGTCCTCCCACAGCTCCAGCCTGGTGTGTGTAATCTGTCCTCTGTGTTCTCCTTGGTGCGGCCTCACATCGACTTCAGTTTCCATGGCATCCTGTCCCACATCAACACGGTGTTTGTGCTGAGGAGTAAGgagggtCTGCTGAACGTGGAGATGGCGGAGTGTGAGGATGAGCTGACTGGAACAGAGATTAGCTGCCTGAGATTGAAAGGCCAGATGATTTCCCTCCCAGAGACCGAAAACATCCTCTTCCTCTGCTCACCCAGCGTGATGAACCTGGACGACCTGACGCGCCGGGGTCTGTACCTCAGCGACATCCCGCTCCACGACGCTACACGTGACCTGGTGCTGCTGGGAGAACAGTTCAGAGAGGAGTACAAGCTCACCCAGGAGCTGGAGATCCTCACCGACCGTCTGCAGCACACCCTCAGAGCCCTGGAGGACGAGAAGAAGAAGACTGACAGGTTGCTTTATTCAGTTCTTCCACCATCCGTGGCGAACGAACTGAGACACAAGCGTCCAGTTCCGGCAAAGCGCTACGATAACGTGACCATCCTCTTCAGCGGCATTGTGGGATTCAACGCATTCTGCAGTAAACACGCCTCCGCAGAGGGAGCCATAAAGATAGTCAACCTGCTGAACGACATCTACACCAAGTTCGACATCCTCACCGACTCCCGCAAGAACCCTTACGTCTACAAGGTGGAGACGGTTGGTGATAAGTACATGACAGTGAGCGGGCTACCGGAACCGTGCACCCACCACGCCCAGTCCATCTGCCACCTGGCCCTGGATATGATGGAGATCGCTGGACAGGTGAAGGTGGACGAGGAACCTGTGCAGATCACCATCGGGATCCACACCGGGGAGGTGGTGACCGGGGTCATAGGTCAGAGGATGCCCCGCTACTGTCTGTTCGGCAACACGGTCAACCTGACGAGCCGCACGGAGACCACCGGAGAGAAAGGGAAGATAAACGTGTCCGAGTACACCTACAGGTGTCTGCAGTCGGTGGAGAACGCGGACCCCCAGTTTAATCTGGAGTACAGGGGTCCCATCACCATGAAGGGCAAGAAGGAGCCAATGAAAGTTTGGTTCCTCTCCCGGAAAACTCTCCCTTAAAGCAGCTGGGGGTCCACAGGGGGCACCGTTTCATTCCGTTTCCTTTACTACAGGTCGTCTGTATAAGCTGTTGGGTGCAGTATTTAATGTACAGTcagtaattacagtaattacactGAATTATGAGCATTTCTGCTCTTCTCTCaacctttatttacagtattaatatttacAGCAGCTACCGGTTCTACAATACAAGTGACTtaacctattattattattattattattattgccacTACTAGCATTAGTATCACTATTATCAGTAGTAGTTGTCttaacactgttttactatTATCACTACCACtcactattattaatattattattttattagtattttttatggCCTGTCACGATTACTAATTTTTAgactataatttatattatcaGTTTAAGTGAATTGTGTGAAATATGCTGATATgaggataataaaataatgaataaataataatattttttgttttaagctgATCATGCAGAGAAGAAGCCATATATCagcatatatcatatatcagtcTTCTCTGAGCTAAAACTTgacagataattttttttttacagattttgatTAATCTGAGTTcagttttttattctgtttcattttaaaatgagttttagcccagaaaaaaatgtttctttttgtttgtattattttacatttatattttacacagcgTCCTGACTTTTTAGGATTTGGGTGTGTACAATAACTAATGAGCCTGTATTTAgtgccacacaaaaaaaaaattcttac

Function

NR:

description
PREDICTED: guanylate cyclase soluble subunit beta-1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006182 cGMP biosynthetic process biological_process
GO:0000166 nucleotide binding molecular_function
GO:0004383 guanylate cyclase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K12319 GUCY1B; guanylate cyclase soluble subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232722.3 True 2692 mRNA 0.48 13 16765427 16798748

Neighbor

gene id symbol gene type direction distance location
fabp2 fabp2,LOC108434304,LOC107714631,LOC107572697,LOC107700317,LOC107695844 coding downstream 8528 16750652 ~ 16756899 (-)
trnar-ccu_39 NA coding downstream 122696 16642659 ~ 16642731 (-)
trnaq-uug_3 NA coding downstream 122824 16642531 ~ 16642603 (-)
trnar-ucg_17 NA coding downstream 123182 16642173 ~ 16642245 (-)
trnar-acg_19 NA coding downstream 123285 16642068 ~ 16642142 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding upstream 5829 16804577 ~ 16827354 (-)
npy2r npy2r,LOC107700264 coding upstream 72269 16871017 ~ 16874481 (-)
fhdc1 fhdc1 coding upstream 244127 17042875 ~ 17059662 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding upstream 290406 17089154 ~ 17113139 (-)
sfrp2 sfrp2 coding upstream 319304 17118052 ~ 17124751 (-)
G184993 NA non-coding downstream 61934 16647410 ~ 16703493 (-)
G185012 myoz2,LOC107695402,LOC103360806,LOC102203409,LOC100711322 non-coding downstream 64119 16699724 ~ 16701308 (-)
G185000 NA non-coding downstream 83570 16677975 ~ 16681857 (-)
G184998 NA non-coding downstream 90418 16674125 ~ 16675009 (-)
G184996 NA non-coding downstream 107835 16655797 ~ 16657592 (-)
G185027 NA non-coding upstream 33718 16832466 ~ 16832777 (-)
G185033 NA non-coding upstream 58643 16857391 ~ 16864206 (-)
G185041 fgg,LOC106602564 non-coding upstream 122288 16921036 ~ 16922494 (-)
G185073 NA non-coding upstream 167261 16966009 ~ 16969764 (-)
G185079 NA non-coding upstream 233383 17032131 ~ 17032392 (-)
smim14 smim14 other downstream 1093473 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1384219 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1424847 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2673837 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2675640 14089706 ~ 14089787 (-)
lrat lrat other upstream 99430 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 431337 17230085 ~ 17241027 (-)
G185295 NA other upstream 453519 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 496753 17295501 ~ 17300782 (-)
nutm1 NA other upstream 514622 17313370 ~ 17328889 (-)

Expression


Co-expression Network