fabp2 (fabp2,LOC108434304,LOC107714631,LOC107572697,LOC107700317,LOC107695844)


Basic Information

Item Value
gene id fabp2
gene name fabp2,LOC108434304,LOC107714631,LOC107572697,LOC107700317,LOC107695844
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16750652 ~ 16756899 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007232723.3
CACAGAGCTGCGGGATTTACTCTGCGTGAGCTTTACTCGGCCACATCAGCACACAGATAATGCAGAGATAAAGGGTGTGATAGTGCCGCTCCCGGTATATAAGGAGCAGTGAGAGGCCACTCAggttcacactcacacactcataacctcacactcacacacaccaggtcagtacacacacacacacacacacactccagcacatCATCATGGCGTTCAACGGCACATGGAAAGTGGACCGCAGTGAGAACTACGAGAAGTTCATGGAGCAGATGGGCGTGAACCTGGTGAAGAGGAAGCTCGCGGCTCACGATAACCTGAAGATCACGCTGGAGCAGAAGGGTGACAGCTTCCACGTGAAGGAGGTCAGCGCCTTCCGCACCCTGGAGCTGGACTTTACCCTGGGGGTCAACTTTGAATACTCGCTCGCCGACGGCACCGAGCTCGCGGGGACCTGGGCGATGGAGGGCGACACAATGAAGGGATCCTTCACCCGTAAAGACAACGGCAAAGTCCTGACCACCACCAGGCAGATCATCGGAGAAGAACTTATCCAGAGCTACAGCTACGAGGGAGTGGAGGCCAAGAGGATCTTTAAGAGAGGCTGAGAAGAGGAGGATCCTGAACTGAAGCGCCGGTTCTGCTACTATTGCACTGTGAATTTTCATATTTAAGGAAGTAAAGCCACTGTTCAGATGTA

Function

symbol description
fabp2 Predicted to enable fatty acid binding activity. Acts upstream of or within response to lipid. Predicted to be located in cytoplasm. Is expressed in brain; digestive system; and kidney. Human ortholog(s) of this gene implicated in alcoholic liver cirrhosis; carotid stenosis; coronary artery disease; end stage renal disease; and obesity. Orthologous to human FABP2 (fatty acid binding protein 2).

NR:

description
fatty acid-binding protein, intestinal

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005215 transporter activity molecular_function
GO:0008289 lipid binding molecular_function

KEGG:

id description
K08751 FABP2; fatty acid-binding protein 2, intestinal

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007232723.3 True 700 mRNA 0.53 4 16750652 16756899

Neighbor

gene id symbol gene type direction distance location
trnar-ccu_39 NA coding downstream 107921 16642659 ~ 16642731 (-)
trnaq-uug_3 NA coding downstream 108049 16642531 ~ 16642603 (-)
trnar-ucg_17 NA coding downstream 108407 16642173 ~ 16642245 (-)
trnar-acg_19 NA coding downstream 108510 16642068 ~ 16642142 (-)
trnar-ucg_16 NA coding downstream 108614 16641966 ~ 16642038 (-)
gucy1b3 gucy1b3,LOC107714654,LOC107757623 coding upstream 8528 16765427 ~ 16798748 (-)
gucy1a3 gucy1a3,LOC107572203,LOC107695445,LOC107700279,LOC107598251 coding upstream 47678 16804577 ~ 16827354 (-)
npy2r npy2r,LOC107700264 coding upstream 114118 16871017 ~ 16874481 (-)
fhdc1 fhdc1 coding upstream 285976 17042875 ~ 17059662 (-)
LOC103033731 arfip1,LOC108260818,LOC108434328,LOC107745866 coding upstream 332255 17089154 ~ 17113139 (-)
G184993 NA non-coding downstream 47159 16647410 ~ 16703493 (-)
G185012 myoz2,LOC107695402,LOC103360806,LOC102203409,LOC100711322 non-coding downstream 49344 16699724 ~ 16701308 (-)
G185000 NA non-coding downstream 68795 16677975 ~ 16681857 (-)
G184998 NA non-coding downstream 75643 16674125 ~ 16675009 (-)
G184996 NA non-coding downstream 93060 16655797 ~ 16657592 (-)
G185027 NA non-coding upstream 75567 16832466 ~ 16832777 (-)
G185033 NA non-coding upstream 100492 16857391 ~ 16864206 (-)
G185041 fgg,LOC106602564 non-coding upstream 164137 16921036 ~ 16922494 (-)
G185073 NA non-coding upstream 209110 16966009 ~ 16969764 (-)
G185079 NA non-coding upstream 275232 17032131 ~ 17032392 (-)
smim14 smim14 other downstream 1078698 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 1369444 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1410072 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2659062 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2660865 14089706 ~ 14089787 (-)
lrat lrat other upstream 141279 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 473186 17230085 ~ 17241027 (-)
G185295 NA other upstream 495368 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 538602 17295501 ~ 17300782 (-)
nutm1 NA other upstream 556471 17313370 ~ 17328889 (-)

Expression


Co-expression Network