kcnip2 (kcnip2,LOC101469196,LOC106526488,LOC105900836,LOC106576844)


Basic Information

Item Value
gene id kcnip2
gene name kcnip2,LOC101469196,LOC106526488,LOC105900836,LOC106576844
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 21136762 ~ 21273827 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235775.3
agtagtagtagtagtagtaagtagtagtagtagtagtagtagtagaagaagaagcGAATCTGGGTTTGTGTGCCGGGAATTCGAgagcgaggaggaggaggctaCAACCGCAACTCGTGACTGACAGCTTGACTTTCACCTCACGAGCgaagaggaggaaaggaggaggaaggtctgaaagctagaggaagagagagagagagagaaagaaaggaggaggagaaggaagaagagggagagcgagagtgagCAAAGAGAGCAGCACAGCGAAGGAGCCACGTCCGGCGATTCCCCCTCCCCTGATCTTATTCTTCCCGATTGTTGAAGCAATCAACTAATCGACCAATCGACCAGTCGACCGGTTGACCATGAGCCACTGCAGAAAAAGGTGCAAGCGGCAGCTCATCAAGGTTGCACGATACTTCTACAGGTTCCTCACCGGCACCTTGACCCAAGACAGTATCGAGGATGATTTCGAGCTCTCCACCGTCTGCCATCGGCCGGAGGGTCTGGAGAAACTTCAGGAACAGACCAAGTTCACCAAGAAGGAGCTGCAGGTTCTTTACAGGGGCTTCAAAAACGAATGTCCCAGCGGTGTCGTGAACGAGGACACTTTTAAAATCATCTATTCCCAATTCTTCCCACAAGGAGATTCCAGTACGTATGCACACTTCCTCTTCGAGGCTTTTGACACTAATAAGAATGGATCGGTTAGTTTTGAGgaCTTCGTCATCGGTCTGTCCATCATCCTCAGGGGGACGATAAACGATCGGCTAAACTGGGCCTTTAATCTCTACGATCTCAATAAAGACGGGTGCATCACCAAAGAAgagaTGCTGGACATCATGAAGTCCATCTACGATATGATGGGGAAATACACGTATCCGTGCATGCAGGAGGACGCTCCCCGAGAACACGTGGAAAACTTCTTTCAGaaaatggaTCGTAATAACGACGGCGTGGTCACCATCGACGAGTTCATCGAGTCGTGCCAAAAGGACGAGAACATCATGCAGTCCATGCAGCTGTTCGACAACGTCATTTAG
>XM_022682122.1
gAGGATCAGCTGAGAGCTCGCGAGCTCAGATCCTGGTTGGATTTCAGTGGAGTGAAGATCTCGCGCGCTCTGCTGGATGAACCGGATTGTGGAGATGAAGGCGAAGAACCGGGACCAGAGCTTGTCTGACTCCAGGGATCTGGATGGATCTTACGATCAGCTGACCGGTAATGCCGCCAGCCAAAGCAAAAAAACCATTAAACAGAGATTCCTCAAACTGCTGCCCTGCTGTGGGCCCAGCGCCGCCCCCTCTGTCAGTCAAAACAGTATCGAGGATGATTTCGAGCTCTCCACCGTCTGCCATCGGCCGGAGGGTCTGGAGAAACTTCAGGAACAGACCAAGTTCACCAAGAAGGAGCTGCAGGTTCTTTACAGGGGCTTCAAAAACGAATGTCCCAGCGGTGTCGTGAACGAGGACACTTTTAAAATCATCTATTCCCAATTCTTCCCACAAGGAGATTCCAGTACGTATGCACACTTCCTCTTCGAGGCTTTTGACACTAATAAGAATGGATCGGTTAGTTTTGAGgaCTTCGTCATCGGTCTGTCCATCATCCTCAGGGGGACGATAAACGATCGGCTAAACTGGGCCTTTAATCTCTACGATCTCAATAAAGACGGGTGCATCACCAAAGAAgagaTGCTGGACATCATGAAGTCCATCTACGATATGATGGGGAAATACACGTATCCGTGCATGCAGGAGGACGCTCCCCGAGAACACGTGGAAAACTTCTTTCAGaaaatggaTCGTAATAACGACGGCGTGGTCACCATCGACGAGTTCATCGAGTCGTGCCAAAAGGACGAGAACATCATGCAGTCCATGCAGCTGTTCGACAACGTCATTTAGGGTGGTGCTCTGGTGGAGGAGACGGGGACGGGGTCCGCGAGAGACGACCCAGACCTGGAAGAGTTCAGCCGTGCGCTGACCGGCCTCCTGTCCTCCTGTCTCCCTTCGTCTCCGTGCAGCCGGAGGACCGCCGCCGCTGTCATTCCCCccgtttctttctttctcccagAGACCTAGTGGAAGATGCATCAGGGCTGGCTTGTAGACCCACTCCAGTACGTCCACGTTCTTTTGTTACGTTCCCGGAGGAGTTTGGGCGGAGACCGGCCGGACTAGACGCAACGCCGGACCCCTGGACGGAGTCCAAACCTGGAGGATAGCATGGACCTTGGCTACGAGCGAAGGGAACCGCACAAACCAACGAACTGGAGGTTCTCGCGTGCGGACGACGGCGCCACCGCCATCTTTTTTCTGATCGCTGACTGGTTTTCTTAACGCATGATGTCACGACTAACCTAACACGACTTAGTGTACCTATTACGTTAAGCTAGTCCAAAGCCTGTCTGTCGTCCTGCTCGTACGTCCACACGTGCCTCGCTCGGACTGTGTGCTGTCGTCACCGCGTGCCATCACCGAGAACCCCGGGGCGGAAGTAGCCCCGCCCACGTAGGCTCCACCCTCCctcagcagcagccaatagagAAACCACGTCGTTCTATGCCTGTACATTCCAGAGGAGACGTCCGAGGCGACTCCTAGGCCTTGAATTCCCTTAGCTGTTCCTATTCTTGACTGTTCCTTTGCTGTCGAGCGAAATTCTTCCTTTATATCCCCTTTATATCAAGCGTCTCACCAAGTAGAGGAACTTTTAACCATGTGTCGTAACTTTTAACCAAGTGGAACCAAACGGAACCATGTAGAACCAAGTGGAAGAAACAGGAAGTTCTATTATGCTGCATTAGTGTTTCCCAATGTTCTCACTGTAATCCCATGCCAGTTATCACCAACCTCCTATCATTGCTGCTCCTGCTGGTAACACCGATACGTCCATCGACACCGTGTACCATCAAAGTGGCGAAGgcacttatatattttatatgttttattcatcaaaaaaaaaatcaacgtGTTATCATCCATGTTATCGTCTTAGGCATGACTTAGGCAAGATACATTAAAAATAGACACACTGAGACATATTGAGACATACTGAGACAGACCAGAGACCAGCAGGCGTCTTCATGTATTACCTGTCCACCTGACGCCAAAGAGTTCAGCCATTCAGTCTGCCAACCAACGCCGTCATCTGCTTCTACAGACATCGGGAACCAAGACCCAAACCCAGGTCTAGACCTAGAACCAGACCTAAACTCAAACCCAGGCCAAGACCCAGGCATGGAATCAAGTGGAAAAGCCAAAGCCAGACCCAGACTCAAATCCAGACCATGACTCGACTCAAATCCAAACCTTTACCCAAACTCAGACTAAGAACTAGACTCAAACTCAGACCCAGACCTAGACCCAAATACTAATCCAGGCATAGACCCATATTTAAAGCAAGACCCAAACCCAGACCTAGACTCAGACTCAAATCCAAATCTAGACTCAAACTCAGACATAGACCCAGACCCAGGCCTAGACGAGACCTAGACTTGGACCTAAACCTAAAAACAAACCCAAATTGAAACCCAGACCAAAACCCAGAAACAATCCCAGACCTAGACTCAAATCCAAACCCAGACTCAATCTCAGAACCAGACTCAAAACCAGACCAAAATATAAATCCACACCCAAAACTAGACTCAAACTCAGACCCAGGCATGGAATCAAGTAGACAATCCAAACCCAGATCTAGACTCAGACTTAAATCCAAACCGAGACCTAAACCCAGACCTAGACTCAAACCCACATCCAAATCCAGACCCAGACCTAAAAACAGATCTAGACACAAACCCAGACCTAGACTAAACCCATATCCAATCTTAGACCTAGACCTAGACCCAAATCTAGATCCAAATCCAGACCCAGACTTAAACCCACAAACACACtaactgcttattaattaaTCACGCACTACAGGATTCACTAAATGATCAAACATTTCTTCTACTGCATGCAgagtttattcattcattcattcattcattgctGACTCACACGTGCAAAAGCACACATACAGCTTGTTTGGTTTATGTAAAAGGAGAAGTACTGCCATTAGAATAGGACTGGATTGGAAGACAGGTTTTTGACCATCCAACATtgagtgcaatcaaatcctcacagcagtgtgctgtagaaacagttactccatcaAAGCAGGATAAAAACTAGTAGTGTATCTATTtcacattatcatcatcatgcttttttttttttccatttctacagtattttacttttgtttgtATCCAGTATTGTGAGGAATAGAATGGGTTTAAATGACATaagcaataatattaataatagtattGATAATATATTGATAAAGGCCGAGCAGTATTGTTGCTGGTTAATGATCTATCAATAGATCAATACCCACCCGTCCCTCCTTAGTGGTAACAGAGGTTTGTTGGTTCAGGGGTCCTGAAGTGGTTCCTCTTCACGCATTTCTGAATATAATTAGCATAATTATGCAAATGAGCGAGTCTAAATGCCAGGGAATTAATTAGGAGGACTCGTTTGGTCACATGATGCCCTCGTTAGAGAAACATCTCTCTCCGGCGCGAGGTTAAACTCGTGTAGAGGGTTTTATTCACGAGGAAGAAATGGGTTTATtgtgtagaggtgtgtgtggaATTTAATTGGCTGTATTGACaatatagttaatatatatattaatatatattttaatatacagtaccagtcaaacatttggaaacacaacttttt
>XM_022682123.1
CATAAGGACATGTCCAGGCTGGCTCTCAGAAAGGACTTGTCCTTGAGGTGTGCGAGAGTCATGTTGACCTTCTTTCACGAGGAGTGGGAGATGGAGGGCTTGCAGACAGTCGGCATCCTGCTGGTTCTCTGCAGTTCCCTCAAACTCCTGCACTTTTTGGGATTGATTGACTTCTCTGCTGGAGACAGTATCGAGGATGATTTCGAGCTCTCCACCGTCTGCCATCGGCCGGAGGGTCTGGAGAAACTTCAGGAACAGACCAAGTTCACCAAGAAGGAGCTGCAGGTTCTTTACAGGGGCTTCAAAAACGAATGTCCCAGCGGTGTCGTGAACGAGGACACTTTTAAAATCATCTATTCCCAATTCTTCCCACAAGGAGATTCCAGTACGTATGCACACTTCCTCTTCGAGGCTTTTGACACTAATAAGAATGGATCGGTTAGTTTTGAGgaCTTCGTCATCGGTCTGTCCATCATCCTCAGGGGGACGATAAACGATCGGCTAAACTGGGCCTTTAATCTCTACGATCTCAATAAAGACGGGTGCATCACCAAAGAAgagaTGCTGGACATCATGAAGTCCATCTACGATATGATGGGGAAATACACGTATCCGTGCATGCAGGAGGACGCTCCCCGAGAACACGTGGAAAACTTCTTTCAGaaaatggaTCGTAATAACGACGGCGTGGTCACCATCGACGAGTTCATCGAGTCGTGCCAAAAGGACGAGAACATCATGCAGTCCATGCAGCTGTTCGACAACGTCATTTAG
>XM_022682124.1
agtCGCTCAGACACACATGCATGCCGACAATCAGAGTCGAGCAGTTTGTGTTATTGCAATTGCATCGCCGGATCCCCCTCCCTGCTCTGTTTTTGAGAGTTTACCGGCGTCTTGGATCCCTCAGGAAGCTCGCAGAGATACATCTCTCGTCTTCTCCTCACTTTCTCAACAGGACTAGCATGACCATGCTTCAGAAAAGCGAAGGAGTACCTTACTTCTAGTTCCAAGAATTGTCCCTGGGAATTGTAGTTCTTTTTATCGCCTTTTTTCCCCCTCGTTTATCTGTTGAAAGACGTCGGGATTGCGTCGGAAACCTGGAGCACAATGCGATGAGAGCCCTCAACTATGATGACCATGGAAGGCCTCGAGATGATTGCAGTCCTAGTGGTCATGGGACTCTTCATCAAGGTCCTAGAGCAGTTCGGACTCTTCGAGCCGGTCGGAGGAGAAGACAGTATCGAGGATGATTTCGAGCTCTCCACCGTCTGCCATCGGCCGGAGGGTCTGGAGAAACTTCAGGAACAGACCAAGTTCACCAAGAAGGAGCTGCAGGTTCTTTACAGGGGCTTCAAAAACGAATGTCCCAGCGGTGTCGTGAACGAGGACACTTTTAAAATCATCTATTCCCAATTCTTCCCACAAGGAGATTCCAGTACGTATGCACACTTCCTCTTCGAGGCTTTTGACACTAATAAGAATGGATCGGTTAGTTTTGAGgaCTTCGTCATCGGTCTGTCCATCATCCTCAGGGGGACGATAAACGATCGGCTAAACTGGGCCTTTAATCTCTACGATCTCAATAAAGACGGGTGCATCACCAAAGAAgagaTGCTGGACATCATGAAGTCCATCTACGATATGATGGGGAAATACACGTATCCGTGCATGCAGGAGGACGCTCCCCGAGAACACGTGGAAAACTTCTTTCAGaaaatggaTCGTAATAACGACGGCGTGGTCACCATCGACGAGTTCATCGAGTCGTGCCAAAAGGACGAGAACATCATGCAGTCCATGCAGCTGTTCGACAACGTCATTTAG

Function

symbol description
kcnip2 Predicted to enable calcium ion binding activity. Orthologous to human KCNIP2 (potassium voltage-gated channel interacting protein 2).

NR:

description
PREDICTED: Kv channel-interacting protein 2-like isoform X2

GO: NA

KEGG:

id description
K23855 KCNIP; Kv channel-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235775.3 False 1046 mRNA 0.50 8 21139591 21220095
XM_022682122.1 True 3682 mRNA 0.46 10 21136762 21273827
XM_022682123.1 False 774 mRNA 0.49 8 21139591 21155556
XM_022682124.1 False 1041 mRNA 0.49 8 21139591 21175444

Neighbor

gene id symbol gene type direction distance location
LOC103026251 NA coding downstream 28728 21059184 ~ 21108034 (-)
LOC111195255 LOC107558209 coding downstream 84094 21036881 ~ 21052668 (-)
arhgap19 arhgap19 coding downstream 196330 20932530 ~ 20940432 (-)
LOC103027406 NA coding downstream 378033 20753938 ~ 20758729 (-)
LOC107197722 NA coding downstream 418081 20709836 ~ 20718681 (-)
LOC103027134 tp53bp2 coding upstream 75732 21349559 ~ 21392008 (-)
LOC103024822 NA coding upstream 255634 21529461 ~ 21532413 (-)
LOC103024095 lgi3,lgi1a,LOC108260544,LOC107701579,LOC107565913,LOC107753733 coding upstream 328189 21602016 ~ 21618998 (-)
ffar4 NA coding upstream 350613 21624440 ~ 21628770 (-)
LOC111195258 NA coding upstream 355775 21629602 ~ 21636692 (-)
G186031 NA non-coding downstream 6585 21126219 ~ 21130177 (-)
G186022 NA non-coding downstream 18330 21114162 ~ 21118432 (-)
G186026 NA non-coding downstream 30477 21106067 ~ 21106285 (-)
G185976 NA non-coding downstream 210122 20919092 ~ 20926640 (-)
G185989 LOC108437859 non-coding downstream 392089 20741649 ~ 20744673 (-)
G186096 NA non-coding upstream 72533 21346360 ~ 21348271 (-)
G186110 NA non-coding upstream 121192 21395019 ~ 21395732 (-)
G186136 NA non-coding upstream 162980 21436807 ~ 21445436 (-)
G186175 NA non-coding upstream 215066 21488893 ~ 21489095 (-)
G186180 NA non-coding upstream 238794 21512621 ~ 21517622 (-)
LOC103038058 slit1 other downstream 220138 20764128 ~ 20916624 (-)
G185990 NA other downstream 384489 20748164 ~ 20752273 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other downstream 458148 20640338 ~ 20678614 (-)
G185943 NA other downstream 509500 20571189 ~ 20627262 (-)
LOC111195252 LOC108260666,LOC108412153 other downstream 1009670 20117426 ~ 20127092 (-)

Expression


Co-expression Network