smox (smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173)


Basic Information

Item Value
gene id smox
gene name smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 10197406 ~ 10219861 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239184.3
ATGAGGAGGCAGCGGCGAGGAGGAACTGGCTGCCGCTGGTTCTGCACAGCgatacacactctctcataaATAGCTACCTACCGAGCGGAGGAACACAAAGAGCTGCTCTCCCGGTTCAAAGCTGAAGACGAACGGAGTCAGGTCCTTTAGAAGAGGAGCTTGGACGGCATGCAAAGTTGTGAAATATCTTCAGACAGCACTGATGATCCTCTTAGTAGCGGCTTTCGCAGGCATCAACAACCGCGGATAGTAGTAATTGGTGCGGGCTTGGCCGGCCTAGCAGCCACCAAAACCCTTCTGGAGAACGGCTTCACCAATGTCACCGTGCTAGAGGCCTCGGACCGAATCGGAGGCAGAGTGCTTAGTGTTCAATTCGGTAAAGCCACTTTGGAACTTGGAGCCACCTGGATCCATGGCGCTAACGGGAACCCCGTCTACCACCTGGCTGAGGACAATGGGCTGCTGGAGCACACTACTGAGGAGGAGTGCAGCGTGGGCCGCATCAGCCTCTACGCCAAGAACGGCGTGGCTCACTACCAGACCAACAGTGGCAAGCGCATCCCCAAGGACCTGGTGGAGGAGTTCAGCGACCTGTACAACGAGGTGTACGAGTTGACTCAGGAGTTTTTCCAGAATGGAAAGCCAGTGGGTGCTGAGACGAAGAACAGCGTGGGAATCTTTACCCGGGATCTGGTACGAAAGAAGATCATGCTGGACCCTGACGACTCAGAAAGCACCAAGAAGCTCAAGCTATCCATGCTGCAGCAGTATCTTAAGGTGGAGAGCTGTGAGAGCAGTTCCCCCAACATGGACGAGGTGTCTCTGAGCGAGTTCGGGGAGTGGACAGAGATTCCTGGCGCTCACCACGTCATCCCAGCCGGCTTCATCAAAGTAATAGAGCTGCTCTCCCAGGACATCCCAGGCCGTGTTCTCCACGTGAACAAACCCGTTCGCCGCATTCACTGGAACTACAGCTGCCCTGACGCTGAAGACTCCGATGGCGCCGACCACAACCAGGACCAGCGCCCGGGTCCAGCTCCGGTACGTGTGGAGTGCGAGGACGGCGAGTGGCTCGCCGCTGACCACGTGATTCTGACCGCTTCATTGGGCGTACTCAAGAAGGCCCACGAGACTCTGTTCTCTCCAAGCCTGCCCCTGGACAAGGCGCTGGCAGTGCAGAAGCTGGGCATCAGCACCACGGACAAGATCTTCCTGGAGTTTGCTGAGCCCTTCTGGAGCCCCGAGTGCAACAGCATCCAGTTTGTGTGGGAGGACGAGGCGCAGCTGGAGAGCCCGGCGTATCCGGATGAGCTCTGGTACCGCAAGATCTGCAGCTTCGATGTGCTCTACCCACCTGAGCGCTATGGCCACATGCTCAGCGGCTGGATCTGCGGCGACGAGGCACTGCGTATGGAGCGCTGTGATGATGAGACCGTGGCTGAGATCTGCACCGAGCTGCTCCGCAAGTTCACAGGGAACCAAAACATTCCAAAGCCACGGCGGATCCTGCGCTCGGCATGGGGCAGTAACCCCTATATCAGGGGATCGTACTCATTTACTCGTGTGGGCTCCAGTGGAGGAGACGTGGAGCAGCTGGCTGAGCCCCTGCCCTACAACAAGAGTACCAAGGCTCCGCCTTTACAGGTGCTTTTTGCGGGTGAGGCCACACACAGGAAATACTATTCCACAACCCATGGTGCTTTGCTGTCAGGCCAGAGGGAGGCGAACCGGCTGATTGATCTGTACCATGACCTCTTCAATGCAGAAACCACAAAGCCTAACATGTAAAATAACGttgagttaataaataaatgaataaaagaacCACTAACTAGTGATACATATGTGTTTTATGCTATCTGTATTCTAAATGATCATGTATAAAAACTAGTAGGGCATTAaaccaataacaaacaaaaaaaaatctctttttactgtatgtagatTTAGACTTATTTAGAGATATTACTTGAGATGTACTGTATAAGGCTGCCAAGTCTGCTGCCATCTTTGGTTCTTATCTTTCTctgattgtttgttttttaatcaataagTTATATGTTTATAACACGTCTGTAATTTAACTTTTTGTAAGTGCCTTCTGTATTTAATTgtgtcatttaaaaatgaaacaaaaccaAGTGGCAATGAAtaaagtgtttattaatgtgaaGTTAA
>XM_015603023.2
ATGAGGAGGCAGCGGCGAGGAGGAACTGGCTGCCGCTGGTTCTGCACAGCgatacacactctctcataaATAGCTACCTACCGAGCGGAGGAACACAAAGAGCTGCTCTCCCGGTTCAAAGCTGAAGACGAACGGAGTCAGGTCCTTTAGAAGAGGAGCTTGGACGGCATGCAAAGTTGTGAAATATCTTCAGACAGCACTGATGATCCTCTTAGTAGCGGCTTTCGCAGGCATCAACAACCGCGGATAGTAGTAATTGGTGCGGGCTTGGCCGGCCTAGCAGCCACCAAAACCCTTCTGGAGAACGGCTTCACCAATGTCACCGTGCTAGAGGCCTCGGACCGAATCGGAGGCAGAGTGCTTAGTGTTCAATTCGGTAAAGCCACTTTGGAACTTGGAGCCACCTGGATCCATGGCGCTAACGGGAACCCCGTCTACCACCTGGCTGAGGACAATGGGCTGCTGGAGCACACTACTGAGGAGGAGTGCAGCGTGGGCCGCATCAGCCTCTACGCCAAGAACGGCGTGGCTCACTACCAGACCAACAGTGGCAAGCGCATCCCCAAGGACCTGGTGGAGGAGTTCAGCGACCTGTACAACGAGGTGTACGAGTTGACTCAGGAGTTTTTCCAGAATGGAAAGCCAGTGGGTGCTGAGACGAAGAACAGCGTGGGAATCTTTACCCGGGATCTGGTACGAAAGAAGATCATGCTGGACCCTGACGACTCAGAAAGCACCAAGAAGCTCAAGCTATCCATGCTGCAGCAGTATCTTAAGGTGGAGAGCTGTGAGAGCAGTTCCCCCAACATGGACGAGGTGTCTCTGAGCGAGTTCGGGGAGTGGACAGAGATTCCTGGCGCTCACCACGTCATCCCAGCCGGCTTCATCAAAGTAATAGAGCTGCTCTCCCAGGACATCCCAGGCCGTGTTCTCCACGTGAACAAACCCGTTCGCCGCATTCACTGGAACTACAGCTGCCCTGACGCTGAAGACTCCGATGGCGCCGACCACAACCAGGACCAGCGCCCGGGTCCAGCTCCGGTACGTGTGGAGTGCGAGGACGGCGAGTGGCTCGCCGCTGACCACGTGATTCTGACCGCTTCATTGGGCGTACTCAAGAAGGCCCACGAGACTCTGTTCTCTCCAAGCCTGCCCCTGGACAAGGCGCTGGCAGTGCAGAAGCTGGGCATCAGCACCACGGACAAGATCTTCCTGGAGTTTGCTGAGCCCTTCTGGAGCCCCGAGTGCAACAGCATCCAGTTTGTGTGGGAGGACGAGGCGCAGCTGGAGAGCCCGGCGTATCCGGATGAGCTCTGGTACCGCAAGATCTGCAGCTTCGATGTGCTCTACCCACCTGAGCGCTATGGCCACATGCTCAGCGGCTGGATCTGCGGCGACGAGGCACTGCGTATGGAGCGCTGTGATGATGAGACCGTGGCTGAGATCTGCACCGAGCTGCTCCGCAAGTTCACAGCAAGATAACACTTTTGGCAAGACCACAGCGTTGAGAAAGAAAAGGGAACCAAAACATTCCAAAGCCACGGCGGATCCTGCGCTCGGCATGGGGCAGTAACCCCTATATCAGGGGATCGTACTCATTTACTCGTGTGGGCTCCAGTGGAGGAGACGTGGAGCAGCTGGCTGAGCCCCTGCCCTACAACAAGAGTACCAAGGCTCCG
>XM_022681807.1
ATGAGGAGGCAGCGGCGAGGAGGAACTGGCTGCCGCTGGTTCTGCACAGCgatacacactctctcataaATAGCTACCTACCGAGCGGAGGAACACAAAGAGCTGCTCTCCCGGTTCAAAGCTGAAGACGAACGGAGTCAGGTCCTTTAGAAGAGGAGCTTGGACGGCATGCAAAGTTGTGAAATATCTTCAGACAGCACTGATGATCCTCTTAGTAGCGGCTTTCGCAGGCATCAACAACCGCGGATAGTAGTAATTGGTGCGGGCTTGGCCGGCCTAGCAGCCACCAAAACCCTTCTGGAGAACGGCTTCACCAATGTCACCGTGCTAGAGGCCTCGGACCGAATCGGAGGCAGAGTGCTTAGTGTTCAATTCGGTAAAGCCACTTTGGAACTTGGAGCCACCTGGATCCATGGCGCTAACGGGAACCCCGTCTACCACCTGGCTGAGGACAATGGGCTGCTGGAGCACACTACTGAGGAGGAGTGCAGCGTGGGCCGCATCAGCCTCTACGCCAAGAACGGCGTGGCTCACTACCAGACCAACAGTGGCAAGCGCATCCCCAAGGACCTGGTGGAGGAGTTCAGCGACCTGTACAACGAGGTGTACGAGTTGACTCAGGAGTTTTTCCAGAATGGAAAGCCAGTGGGTGCTGAGACGAAGAACAGCGTGGGAATCTTTACCCGGGATCTGGTACGAAAGAAGATCATGCTGGACCCTGACGACTCAGAAAGCACCAAGAAGCTCAAGCTATCCATGCTGCAGCAGTATCTTAAGGTGGAGAGCTGTGAGAGCAGTTCCCCCAACATGGACGAGGTGTCTCTGAGCGAGTTCGGGGAGTGGACAGAGATTCCTGGCGCTCACCACGTCATCCCAGCCGGCTTCATCAAAGTAATAGAGCTGCTCTCCCAGGACATCCCAGGCCGTGTTCTCCACGTGAACAAACCCGTTCGCCGCATTCACTGGAACTACAGCTGCCCTGACGCTGAAGACTCCGATGGCGCCGACCACAACCAGGACCAGCGCCCGGGTCCAGCTCCGGTACGTGTGGAGTGCGAGGACGGCGAGTGGCTCGCCGCTGACCACGTGATTCTGACCGCTTCATTGGGCGTACTCAAGAAGGCCCACGAGACTCTGTTCTCTCCAAGCCTGCCCCTGGACAAGGCGCTGGCAGTGCAGAAGCTGGGCATCAGCACCACGGACAAGATCTTCCTGGAGTTTGCTGAGCCCTTCTGGAGCCCCGAGTGCAACAGCATCCAGTTTGTGTGGGAGGACGAGGCGCAGCTGGAGAGCCCGGCGTATCCGGATGAGCTCTGGTACCGCAAGATCTGCAGCTTCGATGTGCTCTACCCACCTGAGCGCTATGGCCACATGCTCAGCGGCTGGATCTGCGGCGACGAGGCACTGCGTATGGAGCGCTGTGATGATGAGACCGTGGCTGAGATCTGCACCGAGCTGCTCCGCAAGTTCACAGCAAGATAACACTTTTGGCAAGACCACAGCGTTGAGAAAGAAAAGGTAAGAGAACAGGGATCTACAGTGCGCACAGTTCATTCTGTAAAGAGTGACAGGGCACCCAGGACACAGCACTACAAATGGAAAGGTACAAATACTAGAAATGATATAGGTTTTAGGTCAAGTACTCTCTCTCTAATATTACCATGTTCTGCTGTCTG

Function

symbol description
smox Predicted to enable polyamine oxidase activity. Acts upstream of or within hemopoiesis. Is expressed in several structures, including anterior axial hypoblast; blood vessel; mesoderm; nervous system; and pancreatic system. Orthologous to human SMOX (spermine oxidase).

NR:

description
PREDICTED: spermine oxidase

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K12259 SMOX, PAO5; spermine oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239184.3 True 2178 mRNA 0.52 7 10197406 10219861
XM_015603023.2 False 1679 mRNA 0.57 7 10199132 10219861
XM_022681807.1 False 1676 mRNA 0.56 6 10199299 10219861

Neighbor

gene id symbol gene type direction distance location
LOC111195209 NA coding downstream 32512 10162402 ~ 10164894 (-)
LOC103026071 NA coding downstream 244180 9905602 ~ 9953226 (-)
mettl14 mettl14,LOC107754186,LOC107591585 coding downstream 405430 9768530 ~ 9791976 (-)
prss12 prss12 coding downstream 431448 9676597 ~ 9765958 (-)
spock3 spock3 coding downstream 1134580 9013877 ~ 9062826 (-)
fbxo41 fbxo41,LOC108260496,LOC107689471 coding upstream 112306 10332167 ~ 10429408 (-)
LOC103029885 LOC108434384,LOC108435548,LOC107702154 coding upstream 254541 10474402 ~ 10479174 (-)
mogs mogs,LOC106609973,LOC106602766 coding upstream 278984 10498845 ~ 10507395 (-)
ston1 ston1 coding upstream 1192749 11412610 ~ 11426503 (-)
rps27a rps27a coding upstream 1209388 11429249 ~ 11431897 (-)
G183699 LOC107715185,LOC107581013,LOC107690133,LOC107745493,LOC107740227,LOC108417841,LOC107738483,LOC108421775,LOC108419634 non-coding downstream 22763 10103992 ~ 10174643 (-)
G183718 NA non-coding downstream 23335 10173143 ~ 10174071 (-)
G183712 NA non-coding downstream 38689 10151636 ~ 10158717 (-)
G183658 NA non-coding downstream 123252 10073771 ~ 10074154 (-)
G183656 NA non-coding downstream 123740 10073282 ~ 10073666 (-)
G183753 NA non-coding upstream 28206 10248067 ~ 10248280 (-)
LOC111195213 NA non-coding upstream 34464 10254325 ~ 10263000 (-)
G183769 NA non-coding upstream 210880 10430741 ~ 10433191 (-)
G183771 NA non-coding upstream 226700 10446561 ~ 10446772 (-)
G183840 NA non-coding upstream 439136 10658997 ~ 10659334 (-)
G183585 NA other downstream 345025 9845822 ~ 9852381 (-)
G183559 NA other downstream 539792 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 2694977 7490075 ~ 7502429 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other downstream 2894214 7165393 ~ 7303192 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other downstream 3770823 6422103 ~ 6426583 (-)
G183880 NA other upstream 1086428 11306289 ~ 11306821 (-)
gtf2a1l NA other upstream 1182846 11402707 ~ 11411644 (-)
G184051 NA other upstream 1975351 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 3006472 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 3331271 13551132 ~ 13594753 (-)

Expression


Co-expression Network