LOC103029567 (rbpja,LOC103029567,LOC108441335,LOC108260898,LOC107563830,LOC107742494,LOC105903551,LOC107562987,LOC107702317)


Basic Information

Item Value
gene id LOC103029567
gene name rbpja,LOC103029567,LOC108441335,LOC108260898,LOC107563830,LOC107742494,LOC105903551,LOC107562987,LOC107702317
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4890474 ~ 4904539 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239678.3
GTAACAGGACGAGGGGGAAGTCTCGCGATAGTTGGACTTTATGAGCGACTTAATGGAAGATGGCGCCTGTTGTGACAGGGAAATTTGGGGACCTTCCTCAGCCAAAGCGCCTCACCAGAGAGGCGATGCGTAACTACCTGAAGGAGCGAGGGGATCAGACGGTGCTTATACTGCATGCAAAAGTCGCACAGAAGTCATACGGCAACGAGAAAAGGTTCTTCTGCCCGCCGCCATGTGTGTACCTGATGGGCTGTGgctggaagaagaagaaggagcagATGGAGAGGGAGGGCTGCTCGGAGCAGGAAGCTCAACCTTGTGCCTTCATCGGAATCGGCAACAGCGAGCAAGAGATGCAGCAACTAAACCTGGAAGGGAAGAACTTCTGCACAGCGAAAACGTTGTACATATCAGACTCTGATAAGAGGAAGCACTTCATGCTGTCTGTGAAGATGTTCTATGGGAACAGTGCAGAAATCGGTGTCTTCCTCAGCAAGCGCATAAAGGTCATCTCCAAACCCTCCAAGAAGAAGCAGTCCCTGAAGAACGCAGACCtgtGTATAGCGTCAGGGACTAAAGTGGCTCTATTTAATCGGTTGCGCTCTCAGACGGTCAGTACGCGGTATCTCCACGTGGAGGGAGGAAACTTCCATGCCAGCTCACAGCAGTGGGGGGCTTTCTACATACACCTACtGGACGATGAGGAATCTGAGGGTGAGGAGTTTACTGTCAGAGACGGCTACATCCACTATGGTCAGACCGTCAAACTGGTGTGTTCAGTCACAGGCATGGCACTTCCACGACTGgTAATTCGTAAGGTGGATAAGCAGACGGCGCTGATGGACGCTGATGATCCTGTATCTCAGCTGCACAAGTGTGCGTTCTACCTGAAGGACACGGAGCGCATGTACCTGTGTTTGTCTCAGGAACGCATCATCCAGTTTCAGGCCACTCCCTGCCCCAAAGAGACGAACAAAGAGATGATTAACGATGGAGCGTCGTGGACCATCATCAGCACAGATAAAGCAGAATACACTTTCTATGAGGGGATGGGCCCGGTCACACTACCCGTCACACCTGTACCTGTCGTAGAAAGCCTACAGCTGAACGGTGGGGGGGATGTGGCCATGCTGGAGCTGACTGGACAGAACTTCACTCCTAACCTCAGAGTGTGGTTTGGAGACGTTGAGGCAGACACCATGTACAgGTGTGGAGAAAGCGTCCTGTGTGTGGTTCCTGACATCTCAGCGTTCCGTGAGGGATGGCGTTGGGTCCGGCAGCCGGTGCAGGTTCCGGTGACTCTGGTGCGAAACGACGGTATCATCTACTCCACTGCGCTCACCTTCACATACACGCCTGAGCCAGGGCCCCGCCCACACTGCAGCGCCGCTGGGGTCATCCTGAGGGGCAGCAGcacctcctcctccatctcGCCGTCAtcatcctcttcttcctcctcgtCTTCGTTGTCGTTGTCTTCATCTTCAGCGTCCAGCCTCCTCGGCTACCAGGCGGCCGGAGGAGTGTCTTCATCGTCTTCTTCCTCCTCGGCCATGTCCGTGTCCTAACCTGGGGATCGCTtttgtgtaagagagagagagaaacataacGTTTCTGATTCTCTGGATAAAAACTGGTAAACTCGTAGGAAAGAACAGCAGTGCGGAAAACGAGAAGAGAAACAacgaaacagaaaaaaaacaaaaactactcAAGACCAGAAACGGCTCTAAAATCTCTTCTTTGGTCTCCGACACCAGCAGAGCTCCTTCTGTACACCTTCAGCAGTCCAGCGGCCAAAAAAACGGAAACGCGACAGTCGAAAAACCCTGCGTAAGTACGGCCACGAgggatttaaaaacaaaaaaacaaaacaaaaaaaaaaaaaaacgcctttgtttaattttttttttgttttttttgtatgaaaagGGCTCGATGCACTGGTGCGCCAGGCATGGAAGAAAAGTTATCATAGTAATATAGTTTTCAAGGACCaaggaatattattattattatttttattgatatataattttataagcTTTAGCTAAGGTacatttttcacctttttttgtttttggttttataaCATATAGTAAACTTTTGTTACCAAATAGTTTTGTATATTTCTCGTGAGCAAAATTTTTTTGTGCTCAGAAGTAAAAAGTTCAGGCGATTTgtctttaaaactaaaaaaaaaaaaaaacacaaaaaaaacgcttgaactttatttttttcgtCATAGCTGCCTTTTAATCCTTCTGGCAACTGCCTTAAAACTTCTGGACTTGTACCagactttttgtttgtttgttcgtctgtttgtttgtctattgtttttttttttcttttttgtaattctGTTTGTCCTGtatatttgtctatttttttccttaaacaAAAGTGTAACTGTGTGAgttttgttcatgtttttggGAGATGGTGGCTTTACTAGTTTGTCATATCAAGTCTTTAACACAAAAGCTTTAACTGACATCGATCTTGCCTAATGAGTGACCTTCTGATTGGTCACGAACTGCCACTATGACTCTGTCCAACGTTTTGCTCGTTTTACAGACTTGTCGACATTTCATCTTGCCAGTAGATCTCTGAAGTTGTACACTCATTCTGTAGCTGGAGTTAAACCCGTTTTAGAAATGATTCCATATTAGGAATGTTACTCTGAAAGTTCTTAAATCTTTAAACTCGCATAGAACGATTGATTGATCTTGCCTTAAACGCCACAAACAAGCTGGGAAATCATTCAAAGTCTTTCTAAGGTCAGTTTTAGGCCATTAATTTTCCATTAATTCCCATTTTCCAACTTCCATTAGTACTCAAATAGCACTTGGTGCTTCACATCAGTGACACTGTGTGTCCTTGTTATGTAGTGTATTAAAAGTTGGCTTACTTTCA

Function

symbol description
rbpja Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including animal organ development; blood vessel development; and embryonic pattern specification. Predicted to be located in nucleus. Predicted to be part of MAML1-RBP-Jkappa- ICN1 complex. Is expressed in head; midbrain; and otic vesicle. Human ortholog(s) of this gene implicated in Adams-Oliver syndrome and dilated cardiomyopathy. Orthologous to human RBPJ (recombination signal binding protein for immunoglobulin kappa J region).

NR:

description
recombining binding protein suppressor of hairless-like

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001757 somite specification biological_process
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0072149 glomerular visceral epithelial cell fate commitment biological_process
GO:0007367 segment polarity determination biological_process
GO:0039021 pronephric glomerulus development biological_process
GO:0039022 pronephric duct development biological_process
GO:0030325 adrenal gland development biological_process
GO:0022008 neurogenesis biological_process
GO:0060840 artery development biological_process
GO:0005634 nucleus cellular_component
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K06053 RBPSUH, RBPJK; recombining binding protein suppressor of hairless

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239678.3 True 2919 mRNA 0.45 11 4890474 4904539

Neighbor

gene id symbol gene type direction distance location
LOC103031161 NA coding downstream 14201 4853649 ~ 4876273 (-)
LOC103027755 NA coding downstream 57996 4819940 ~ 4832478 (-)
LOC103036327 LOC108415078,LOC107562921,LOC107702324 coding downstream 330554 4519130 ~ 4559920 (-)
hgsnat LOC108411545 coding downstream 412182 4440549 ~ 4478292 (-)
pi4k2b pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 coding downstream 453276 4423892 ~ 4437198 (-)
LOC103030845 LOC108441329 coding upstream 13595 4918134 ~ 4931683 (-)
LOC103030534 LOC108441328,LOC108260848,LOC105903575,LOC105020871 coding upstream 49273 4953812 ~ 4969692 (-)
LOC111195179 NA coding upstream 131538 5036077 ~ 5058756 (-)
LOC111195261 NA coding upstream 159561 5064100 ~ 5075191 (-)
LOC111195181 NA coding upstream 251206 5155745 ~ 5158427 (-)
LOC111195178 NA non-coding downstream 1388 4882275 ~ 4889086 (-)
G182706 NA non-coding downstream 39066 4850589 ~ 4851408 (-)
G182672 NA non-coding downstream 40482 4846885 ~ 4849992 (-)
G182671 NA non-coding downstream 41278 4848271 ~ 4849196 (-)
LOC111195163 NA non-coding downstream 96047 4793211 ~ 4794427 (-)
G182720 NA non-coding upstream 31071 4935610 ~ 4941127 (-)
LOC111195180 NA non-coding upstream 124583 5029122 ~ 5032848 (-)
G182820 NA non-coding upstream 194455 5098994 ~ 5099951 (-)
G182832 NA non-coding upstream 236268 5140807 ~ 5141055 (-)
G182845 NA non-coding upstream 340744 5245283 ~ 5283507 (-)
G182501 NA other downstream 1340061 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1435888 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 3178337 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 4382410 494190 ~ 508064 (-)
LOC103026712 NA other downstream 4842180 45736 ~ 48294 (-)
LOC103027068 NA other upstream 202497 5107036 ~ 5109098 (-)
G182810 saraf other upstream 272837 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 381407 5285946 ~ 5295716 (-)
G183043 NA other upstream 1206831 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1447636 6352175 ~ 6408023 (-)

Expression


Co-expression Network