LOC103026500 (saraf)


Basic Information

Item Value
gene id LOC103026500
gene name saraf
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5208590 ~ 5213227 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007241143.3
CTCCGGGCTGCAGCggtgaggaagaggaagtgGAGACGTGTGTTTTAGAGCTGTTTACATCAGATTACATCAGGACTTCACTGAATCAGCGTCGATTAAAACTTCTGCAGCTTTTAAACCGAGTCACAAACTTGAGCAGCACTTCTCCAGGCCTGTTTAGAAGCAGAAACGCCAGTTTAAACATGGAGAAACagatctttctctttctcctgctgAACCTCTTCCTGCCCGGCCTATACTGCTGGAATAATGGTGCGGTGTTGCTGCGTGACGTCCAGGTCCTGACGCTCTATAAGGGACGCTACACCGCCGCGCGCCGCACCAGCCCCATTCCTCAGCTGCAGTGTGTCGGAGGAACTGCTGGCTGTGGCTCTTTTGTCCCAGAGGTGGTCCAGTGTCAGAATAAAGGATGGGATGGGGTGGATGTGCAGTGGGAATGTAAGGCAGATATGGATAACTGGTACCGGTTCGGTCGGGTGGAGGTGTCGTGTGAAGGTTTTAACAGTCCTGATGACGCGTACATTCTGCAGGGCTCCTGCGGTCTTGAGTACACTCTGGAGCTCACAGCAGAGGGCAAGCAGCACCAGGGCTCCCGTGGCTCTTCTGGGTCCTCAGGGTTCGCCGGTTTTGCTTCCAGTTTCTTCCAAGATAAAGGTCACAGTGGTGGTGGATATTATCAGCAGGGTGGATCGTCAGGTGAGGGTGCTGGGGGTTTAATCGTTATCGCACTCTTCCTGTTGCTGGCGTATGGCGTCTACAAGATATTCCTGTGCAATCCCACCCATGGCCACCAGGGTTTCCAAGGAGGAGATGGGTCCACTGGAGCCTGGAGCGGTGACTACAGCAACACGGGCCCTCCACCGCCCGGGTTTAAGCCGGACTACACAGCTAATTCTTCTGGTTTCGACTCCTCTGGACCAAGTTGCGGTTCCTCCGGGCAAGGTTATGGTTTCTCCGGGCCCAAATATGGATTTTCGGACTCCTACACTAGACCTCAGACTGCAGGGACTGGATTTTCCTCCCGCCAGAGCGGCTTAGGAGGAGGTGGATTCTGGACTGGAATGGGCACTGGTGGGGTGCTGGGATACCTGTTTGGCAGTCAGAGGCGTCAGCCTCCAATGGGCACGGCTAGACCTTCGTACTACAGCCCTCCTCCTGCACCCAGCACCAGCTCTGGAACTCGCACTGCCTCAGGTTTTGGCGGCACGAAGAGAAGATAAACATTGCAGATGTAGTT

Function

symbol description
saraf Predicted to be involved in regulation of store-operated calcium entry. Predicted to act upstream of or within calcium ion transport. Predicted to be located in endoplasmic reticulum-plasma membrane contact site. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human SARAF (store-operated calcium entry associated regulatory factor).

NR:

description
PREDICTED: store-operated calcium entry-associated regulatory factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007241143.3 True 1237 mRNA 0.55 6 5208590 5213227

Neighbor

gene id symbol gene type direction distance location
xpa NA coding downstream 3858 5199748 ~ 5204732 (-)
LOC111195182 saraf coding downstream 25576 5177370 ~ 5183014 (-)
LOC111195181 NA coding downstream 50163 5155745 ~ 5158427 (-)
LOC111195261 NA coding downstream 133399 5064100 ~ 5075191 (-)
LOC111195179 NA coding downstream 149834 5036077 ~ 5058756 (-)
LOC111195262 NA coding upstream 166490 5379717 ~ 5380823 (-)
LOC103031479 mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134 coding upstream 406965 5620192 ~ 5694606 (-)
LOC111195189 NA coding upstream 622432 5835659 ~ 5844491 (-)
LOC111195190 klf12b,klf12,LOC107668887,LOC107740907 coding upstream 652807 5866034 ~ 5890681 (-)
tbc1d1 tbc1d1 coding upstream 715511 5928738 ~ 6024934 (-)
G182832 NA non-coding downstream 67535 5140807 ~ 5141055 (-)
G182820 NA non-coding downstream 108639 5098994 ~ 5099951 (-)
LOC111195180 NA non-coding downstream 175742 5029122 ~ 5032848 (-)
G182720 NA non-coding downstream 267463 4935610 ~ 4941127 (-)
LOC111195178 NA non-coding downstream 319504 4882275 ~ 4889086 (-)
G182845 NA non-coding upstream 32056 5245283 ~ 5283507 (-)
G182846 NA non-coding upstream 39666 5252893 ~ 5257091 (-)
G182852 NA non-coding upstream 55764 5268991 ~ 5280554 (-)
G182861 NA non-coding upstream 94134 5307361 ~ 5320223 (-)
G182869 gne,LOC106602595 non-coding upstream 117802 5331029 ~ 5334461 (-)
LOC103027068 NA other downstream 99492 5107036 ~ 5109098 (-)
G182501 NA other downstream 1658177 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1754004 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 3496453 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 4700526 494190 ~ 508064 (-)
LOC111195184 NA other upstream 72719 5285946 ~ 5295716 (-)
G183043 NA other upstream 898143 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1138948 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 1208876 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1952166 7165393 ~ 7303192 (-)

Expression


Co-expression Network