LOC103030053


Basic Information

Item Value
gene id LOC103030053
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 20500934 ~ 20512281 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253174.3
gagggaggaagagagagagagacatagttcaatgttttaaaaatgttttaaaaatgcccTTCCTGGTTGTAAATCACTTCCTCTCTGCTGAGAATCAGATTGAGCTTTAAAGTAAAACAGCAGGTTTGAGTTAATCTGATCCACTGAACTCCAGAACTGAGTCTTCTGTACTCTTCTGTTCTGTGGATCTCTCCACCCACACTTCTCTGGATCTCTCCACCCACAGTTCTCTGGATCTCTCCACCCACAGTTCTCTGGATCTCTCCACCCACTCTGCTCCGCAGCCCTGGAGTCGTTACAGCCTTATGGATCCATTGGAGTCCAGACTTCTTCTCCTCGAGAGTCATTTTACCTGGGCTCTGAGTGAGGAGGATTTCAGTCCCCATGACTTGGTCAACCGCTTAAGAGAGCAGATTGAACTGGAATTGAAATCTGGAGAGGCGAGAGTCACTCGTTCGTATTGCTCTTTGGCGTATGTTAGGTATCTCTATGGCGATCTGGTCGAAGCGCTCGCAGATCTTCGCAAATCTGAGGACCTTGCCAAACGACACTTTGGTAAGAGGAGTGAGAAGTTTCTCATGGTCACCTATGGGGACTTCGCCTGGTTGTACTTTCACATGGGGAAAGTCTCTTTGGCTGAATATTATTTGAAGAAAGTGGATGAGATCAGGGTAAAGTTTGGATCCAGTAACGAAGTCCACAATGAGGTGCTCAGGGAAAAAGGATGGGCCTTCCTTAAGTTTTCTAGAAAGTACTACAATGGTGCTGGAGAATGCTTCAGACTGGCCCTCGAAACAAATCCAGATGACCGTGACTTAAACGCTGGTTATGCTATTGCTTTGTATCGCACAACATTCGATCCCCCAGGTTCACGTGACTCGATGACTATTGCCCAACTCAAACGTGCCATTGACTTGAATCCAGAAGATGCCGTTCTCCTTGTGTTTTTGGCCCTCAGATTAATCAGCATAAAAAAGAGTCCATCTAGCCCTCACTCCAAAGTGCAGGGTCCCTTTCAGATGATCGAATATGTTGAGGCAATCATGTTGGTAGCGAAGGCGCTTAAGATGTCGCCTGAGAATCCCCACGTAATGCGATATGTATCGCAATTCTGCCGTAAGCTGGGATCTGTCGACTTTGCCATTTGCCAGCTGGAGAAAACACTTGTACACACCCCGGATTCAGCCTTCACCAATCATCAGTTAGGCTTGTGCTACATAACAAAAATGATAGAATTTGAAAAGAAATATGGACAATGTCATAAAACTGAAAACTATGAAGCACAGAACTGTCTTCGGAAGAGCATCTACCACCTGGAAAGAGCCGTTTCGCTGAAGCCCCTGTTCATTGTTGCTTTGGCTACACTGGCGGTGCAATACGGACAAATGGGAAACATTTTGAAGGCGGAGGAGCTTTTCCAGCAGGCATTTCAACTTGCATATAAGAAGAAGGAGCATCTCCAGGTAGTCTATGAACTGTACGGTCGATTTCAGCTGTACAGCAAAAGATCTGAGCAGTCTGCAATTTACTATTACATGGAGGGTCTAAAGCTAAAGATGATAAACAAGAGTGGAAGGTGTGAAAAAGGACTCAGGGACATTGCTAAACATCGAGCTGCTAGGGATCCAAAAGACAGCAAATCATACGCCATAGAAGGATTTATTCACGAGCTGAAGGGCGAAAAGCTAAATGCAGAAGTGTGCTATAAGAAAGCCTTGACCACGGGTGTTGCAATTGgaGAAAGTCCTCTGCTTACAGAGCTAAGAGTTTGGCTTTTAGCATTCAAGGGAGCAGAGGAACGTGCTAGAAACGTGATCCTAGACAGTCGTTCCCGTGCTGAGGAGGTGCTGGGTTTTGGAAGACCAGTGCTTCAAAAAGGAACGATGGCTAAGAAAACTGTGTGCCTGGTTGAGACTGATCTTTGCAATGCCAAGAAAATTCTCCCAAGAGAACGGTCCCTTCTTGCCCCTGGACCCCACGCCATCGTTCTTGCCTTTCTTCACGAGGGACAACTCAAGAAGACCAGATCAGTCCTACAGGATCTGGAGATCTTTGGTCGGAGCTTCTGGAAGCATGTGATCGTGTTGTTTACTAATAAAACCACTTCCTTACAGGGAAGTGTAGCGCAGTGGCTCCTGCAGAAATGTGGAGGCAGGTTCTACATTGCTGGGGTTGGGACTCGGACAGCTCAGACCATGGAGTTCTCCGAGAGGATTATGACCATGATTTCAAGGAACAAGACCATGCACCTGATAGTCCCAGCACTTGTGAACCGGTCCTTCTTAAAGATGGTTAcgGAGACAGAAAGTGAAAAGAAAATTACTCCAGAAGTGATAACTGAGAAGGGCCAATTGAAGTACAGGTTTCTGTGCAAACATGCCGGATGGTTCCATTGTTCTTTCACCAGGCTGGGATTCAGAATGAATGGAGAAGGAGAGGTGGTGTACAGAACTGTGGACGAGGACAGCAGCTGCTCAGCTTCACCCAATCAGTATTCAGCAGGTCCTCTGTACGATATCACATGTGTCGGGGGTCAGCTCTCTCATCTTCAGCTCCCCCACTGCGAGATCTCCCCAGATGACTGTCGCTTCATGACTGTGGAGCATTACACTGAAGGGAAGGTGGAGGTCCTGAAAGCTGAttatttcacacacactcatgtgaGCGTGAGGGTTCCAGGACTGTCACTGTTTCAGCTGAAATACATGCTGAACTGGTTTAAAGGTAAAATCAGGGGACAGCTGATACTGACATATTACCCTCTACCCAAACACCGGCTGCACGTGTTCCTACGGCCTCATAACACAGACCTGCACAAGcTACTCAAAAAAGGCAGTATACGTCTTGAAGGAGCTTTCGACACCAACCTTAAACACGGACACCGGTACAACCTGACCTGTGAAGATGTAGAACAACAGGAAAGGCAGCAGAAAATACAAGACAGTGACGGTCTTTTCCTGAGACACATCTTCACCGACAACCCAACGTTTGTGATCCACCTGGAAAGAAACACAATGAACATAAAGTTACATCTAAAGGAGAAAGGCACCGATAAAATGGTCTGGGGATATGATTTACTAGACCTTAGAGAATATCAGGACAGAAGCACTTCATCCGATGAAAGTTATCAGAGAAAGATCACTACACCGGATAAAAAGAAATGCATGGACTTCTTTCTCGGGAATTGGGATGAACTGGTCCAAAAGGTCACCAATGTGGACGCCATTCTGGATCGCCTGGTTCGATTTATTCACCCAGAAACCTTGGATGAGATCAGAAAAGAGAGCACTGCACAGGCCAAAACCAGGGCTCTACTTAATTTAGTGGGGAAAACTCTGTCACCACAGGAACTCTATCGAAGTCTAGCAGATGTTCATCCAGACCTGGTGAAGGACATGCTGTGAAATAAACAGAGACTGACCAGGACCATGTGATTAGTTGTGAACATAGACTTTCTACGAGCCTTACCCTGGAATTCCACCTACGGTTCAGAGAAAGCCTCTCTGATGTTGaggcttaaaggagaactccggtgtaaaattgactttgggtgtagtaaaacatgatgaagAGTACTAACCCGTCTCCTATTTCcggcagctttccgagatccaacaattttattctgtttgtccAAATACCCTTTAGAATGGGTcttaatggggcatattttgcccctgcagaaaAATGTCACTTTtaacaccgttatccagctcaaagtagctccacacctcattgatagaatccagagagccctgacacttaaaacgaggcattaaaataggaatctgccaaagtcagagctcacctgactacTCTGAAAGGCAATGATGAGCAAGTTGTATGAgcaaaagtgtacttttcccgttgttacgatagcaaagatacactaTTTAAAACCTGTAAAGAAAACACAGCAAGTGTATTTTTAACAGCTAACATTTTTTGGTTATTAgaactttaatattaatgatattacaAATTTCACTTTGATAcattttctggatgtttttagAACATAgaacatgttttaatgtttagttttggGACTGATACTTTTAACGTTTTCATGACGTTACTATTCGTCTGGCTGGCAGTGTTATGTTTAAGAAACGTTCTAATAATGTTGTTATACAAACTATTATTATCTCAGATGTTtacagaacatttatttttaatgatacagGCTTaactaaccttcctggaacctttaaAACATTGAGAAACGTTCTTATAACATTCAgttaactaaaaaaactaaaacagtgtaGAAATTACATTTGTTCGCACTTTACCGAGGAATTGTTTAAATTTAACACcagctttttcattatttcttctgaaatcaagagaaTTCAAGAGTTTATGgtgcttttgttggaataactgtctctactgtaacAATGCAATGTTAAACTGTTTTTGTACTAATTGTTGTATATcttgtaaattgtaaagaatGTGAATGAAAACATATACAGTGATTAAatcactatttatttta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253174.3 True 4504 mRNA 0.43 12 20500934 20512281

Neighbor

gene id symbol gene type direction distance location
LOC103040253 ick,LOC108261001 coding downstream 1367 20485706 ~ 20499567 (-)
LOC103040568 NA coding downstream 87913 20401634 ~ 20413021 (-)
LOC103030999 vit coding downstream 101122 20357861 ~ 20399812 (-)
ddx21 ddx21,LOC108414772,LOC100194728,LOC107693788 coding downstream 181622 20300976 ~ 20319312 (-)
LOC111195146 NA coding downstream 213612 20282842 ~ 20287322 (-)
LOC103039929 NA coding upstream 2289 20514570 ~ 20522866 (-)
LOC103039622 LOC105906630 coding upstream 19937 20532218 ~ 20548736 (-)
LOC103029107 NA coding upstream 39516 20551797 ~ 20570115 (-)
LOC103038689 zgc:55733,LOC108260929,LOC107751522,LOC107566606,LOC107702784 coding upstream 179648 20691929 ~ 20707650 (-)
LOC107197722 NA coding upstream 197555 20709836 ~ 20718681 (-)
G185934 NA non-coding downstream 121989 20352890 ~ 20378945 (-)
G185892 NA non-coding downstream 504681 19969909 ~ 19996253 (-)
G185687 NA non-coding downstream 586764 19913912 ~ 19914170 (-)
G185671 NA non-coding downstream 729387 19771323 ~ 19771547 (-)
G185654 NA non-coding downstream 932738 19566162 ~ 19568196 (-)
G185967 NA non-coding upstream 142324 20654605 ~ 20656786 (-)
G185974 NA non-coding upstream 187371 20699652 ~ 20701062 (-)
G185985 NA non-coding upstream 226409 20738690 ~ 20739699 (-)
G185986 NA non-coding upstream 226601 20738882 ~ 20739874 (-)
G185989 LOC108437859 non-coding upstream 229368 20741649 ~ 20744673 (-)
LOC111195252 LOC108260666,LOC108412153 other downstream 373842 20117426 ~ 20127092 (-)
G185890 LOC108443824 other downstream 549138 19948082 ~ 19951796 (-)
apela NA other downstream 2403243 18023122 ~ 18097691 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other downstream 2450565 18018722 ~ 18050369 (-)
G185321 NA other downstream 3168980 17330018 ~ 17331954 (-)
G185943 NA other upstream 58908 20571189 ~ 20627262 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other upstream 128057 20640338 ~ 20678614 (-)
G185990 NA other upstream 235883 20748164 ~ 20752273 (-)
LOC103038058 slit1 other upstream 251847 20764128 ~ 20916624 (-)

Expression


Co-expression Network