LOC103027755


Basic Information

Item Value
gene id LOC103027755
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4819940 ~ 4832478 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015602411.2
ATGTGGAATCCCTCCAACAACACTCATGACCTGCTGGTGAAGAACATCACTGAATCAGATCTGGGTCTGTACTACTGCGCTCTCCTGGAGAAAACGATTACAGAAAATGCAGCTGGAAAAGGTGGTGTTCCCAAAGCTGTCTATCGTTATGGTAACAGAACCACTCGACTCTCTTTACTGGAGACCACCTCCACACCTTCTTGCATGACCTGGAAGCTGCTGGTCAGCCTGTGCCTTGGGTGTGTTCTTCTGTCCTCACTGATCTCCTCCACCTGTGTGTACTTCATCTGCAGATCCAGAATCAAAGgtgtttcaggtgtttGGTTCTCCAGGATTTCAGGAGAAGAAGTGGAGATGAGAGTCAGAAGAGGAGATAATATCACTCTCTACAGCGACTGTGTTTGGAAGACTGGGTTTAAAACACTGTGGTTTAGAGGATCCTCACCCGAGCGTCCTCCCACTATACTGGCTGAAGATTCAGTGTTCATGAATCATCCACGTTACTCTTTTGTATGGAATTCCACCAATCAAGCTCATGATCTGCTGTTAAAGAATGTTTCTGAACCTGATCTGGGTCTGTATTACTGTGCTCTACAAAGGATTAGACCTTCAAAAATGAAACATGGCAATAAATCCAATAAATCCAATAAAGGAAACAGAACTATTCGACTCTGTATCAATGACTCCATTGTTCCGTGTACTGATGACTCCAAGACCACCTCCACCCCTCCTGTATCAGACTGTAGCGTCTGCTGGAAGCTGCTGGCCAGTGTGTGTCCGGTGTGTGTTCTCCTCATCACCATCTGTGTGTACTGCATCTACCGCTACAGAACTACAGGTCACATCCTTCCCACAACAAGATCTGAAGGTGGAGCTGACCAGCCTGGGAAAACACCAAGAATGGGAAAGAGTAATGAgGTTGGAGAAGAAGATGTGGTTGAGGTGTGTTACGCTTCATTGGATCTCCCAATCAGAGGACAGGAACATCTGAAGACGAACCAGAAGAGGAAGGCAGTCGAGAGCTCCGATTTTAGCACATATTCTGAGGTTAAAATTGGAAGAGTGTAGATCTTCTGAGGAGaacaagcaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015602411.2 True 1091 mRNA 0.46 6 4819940 4832478

Neighbor

gene id symbol gene type direction distance location
LOC103036327 LOC108415078,LOC107562921,LOC107702324 coding downstream 260020 4519130 ~ 4559920 (-)
hgsnat LOC108411545 coding downstream 341648 4440549 ~ 4478292 (-)
pi4k2b pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 coding downstream 382742 4423892 ~ 4437198 (-)
c21h4orf33 cunh4orf33,c29h4orf33 coding downstream 424353 4391791 ~ 4395587 (-)
LOC103028206 NA coding downstream 528953 4280286 ~ 4290987 (-)
LOC103031161 NA coding upstream 21171 4853649 ~ 4876273 (-)
LOC103029567 rbpja,LOC103029567,LOC108441335,LOC108260898,LOC107563830,LOC107742494,LOC105903551,LOC107562987,LOC107702317 coding upstream 57996 4890474 ~ 4904539 (-)
LOC103030845 LOC108441329 coding upstream 85656 4918134 ~ 4931683 (-)
LOC103030534 LOC108441328,LOC108260848,LOC105903575,LOC105020871 coding upstream 121334 4953812 ~ 4969692 (-)
LOC111195179 NA coding upstream 203599 5036077 ~ 5058756 (-)
LOC111195163 NA non-coding downstream 25513 4793211 ~ 4794427 (-)
LOC111195177 NA non-coding downstream 304057 4513700 ~ 4515883 (-)
LOC111195176 NA non-coding downstream 328550 4488564 ~ 4491390 (-)
G182571 NA non-coding downstream 661155 4157194 ~ 4158785 (-)
G182557 NA non-coding downstream 740531 4079080 ~ 4079409 (-)
G182672 NA non-coding upstream 14407 4846885 ~ 4849992 (-)
G182671 NA non-coding upstream 15793 4848271 ~ 4849196 (-)
G182706 NA non-coding upstream 18111 4850589 ~ 4851408 (-)
G182710 NA non-coding upstream 33737 4866215 ~ 4950825 (-)
LOC111195178 NA non-coding upstream 49797 4882275 ~ 4889086 (-)
G182501 NA other downstream 1269527 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1365354 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 3107803 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 4311876 494190 ~ 508064 (-)
LOC103026712 NA other downstream 4771646 45736 ~ 48294 (-)
LOC103027068 NA other upstream 274558 5107036 ~ 5109098 (-)
G182810 saraf other upstream 344898 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 453468 5285946 ~ 5295716 (-)
G183043 NA other upstream 1278892 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1519697 6352175 ~ 6408023 (-)

Expression


Co-expression Network