LOC103029885 (LOC108434384,LOC108435548,LOC107702154)


Basic Information

Item Value
gene id LOC103029885
gene name LOC108434384,LOC108435548,LOC107702154
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 10474402 ~ 10479174 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015603022.2
CAGATAGCGGGAGAACATCGAGCTGCAGTCACACATCATCTGAGGAaaccaaaaaataacaaaacaaccaaaaacaGGGGGAATTTCCACGCTGACTTTTATTGTTCTTCTTCTCGGTTTGGATCTCAGCCTTTTTTATCGGAACCGGTTGGCAGAACAGAAGCACTCCTGCATCTCCATCATTTTTCTTTCTGCTCAATATCTCTGTTTTTCTCCTCGGATTGAAAGGCGCTCCGCCAATATGCTTAACAACATGGATTTGAACTCTCAGGACTCTTTCTACCCGCAGTTTGAGAGTTGTAACACCTCAACCATGGGAATGGCAACTCCCGGAGCCAAAGAAGAGCGGGACTTGGTGTTTATGGACGCAGCGCACTTTCAGCACGACACCTCGGTAACGCCAAAGACCGAGCCGGTCTCGGCGGACCTGTACTCGCCGTGTTTGGGCCCCCGGGGAAGCTTCGACTCCTCGCTGTCCTACTCGGGCAGCTTCTACGTGGAGGCGTCACGCGGAGCCTCGTGCAGCGCGGAGACTCTGCTCAGCATGATCAGCGAGATCGTCGGCGGCGTGTCCACGAGCCCCGGCGGGAGCTCCAGCCCGCCTCCACTGTATCCCCCGGTGgggcaacagcagcagcagccgcagcCGGCGGGTCAAGGCTACGCGGACTCCGTGCCCCTGGCCGAGGCGGCCGCGCTGCCCGTGCTGGTGGTGAAGCGCGAGTTGGAGAGCGACGGGTACGAGTGGGGCACGAGCGAGTATGACAGTAACAACAACTCGAACAATGCAAACAACtcgaacaacaacaacacaaacaaCTCGAACAACAATGCAAACTCCAACAGTGGCTACTACTGCTACTTCCAACCGGAGCCCTTCCAGCACGGGGACGTCAAAGACCTGCTGGAGACCTTCAACCACGTGAACCCCGAGCCGGACTTCAAAGCCGCTGAGAGCACCGTCAAGCACGAGCAGGACTTCGCAAGCGCGTGCGTGCACGCTTTTGGCGCGTACGGTGCCGAGGAGGACCTGCACAACACCAACAGCCTCAGCACCACCAACAACAGCATCAGCACCAACAGCATCAACAGCAGCTACCTgacctcctcctcttcatcatcctcctcctcatcgTCCTCCctatcctcctcttcctcctcctccaccatcGACTCgctcctcttctcctccctgCTGCCCGAGACCTTCGCGCAGACCTACGCGCCCCGCGCGCCCAAGCCCGCCCGTGCGCGCAAAAGCGCAGCCGGCTCCCAGGCCCGCGGTACGCCGCCGCGCGCCAAAGAGAAGCCCTTCGCTTGCCCCATGGGCGGCTGCGAGCGCCGCTTCTCGCGCTCGGACGAGCTGAACCGGCACGTGCGCATCCACACCGGCCACCGACCCTTCAGGTGCCGCGTGTGCGCGCGCAGCTTCAGCCGCAGCGACCACCTGACCACGCACACGCGCACGCACACCGGCGAGAAGCCTTTCTCGTGCGACTCGTGCGGCAAGCGGTTCGCGCGCAGCGACGAGCGCAAACGGCACGCGCGCGTCCACCTCAAGCAGCGCGAGAAGGAGCTCGAGAGGCAGGCGGCCGGAGCGGCGGCGGCTGCAGCTGCGGCTGCGGCGGCAGCGGCGACCGGGGGGTGGTCGTTTCCCAGCACACGAGGGGGGCTTCTGagttaaacaaagaaacaaactattgaacaaacaaactaatGATCAAAGGCCTGAGGAGCTTCTGAGGCCCTGTAATGTAGAGCTTTGTGAAAGGGAATCTCGAGGGAAAGAGTGGGTGTAGGTGTGTAAGAGGTGAATGTAAgtgtgaacgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgcaaGAAGCTTCTTGGAACACCTTGGAAGGCATCAAAGCTTTTATGtatgtaaaaacaataaaaccgtCACATTGCAGTATAGGGCTCACAGAGTAcagcactcttaaaaataaaggctcTCCAGATGGTTCTTTCATTGATGTCATAGGCCTTGAAGAACCATGTTTATACAGTAATTCAATAATGATAcatcataaaaagaaatataataatcTGAAGCTTTAAAAGGTTTAACACATCGCCAAATCTAGACAAAATCTAACCAGAACTGGTTATTCTCCTTTGGTATCCCCCAAGGAACCATTTGAAGCCCCATTATGTTTAAGAGTTTAGGTGCTTGGCCCCCTAATGAAAGGCTATGTGATCAAAGTTTGAGCATCAGAATGGAGGCCGAGAACTCTAAAAGGAACCCAGGTCTGCTCCTTCCTTCACCACCCCTCTGTGCCGCTTGCTCTCTGTGCAGCAACTGCAGAACTGAAAGGGAAGAAAAACTCTTTGATCTCTTGATCTTCTGGGGTTCAAATTTTGGTTTACGTTTTCCATCTGACCTGCAGTTCAGCATTTGCTCCTGCTGGACAGCTCCTCCGACCTCAATTCCTCCTGAATGTATTGCACTTAATCTCCTTAAACTTTAAGAGTCTTTTAttggaaaacaaaacagaaacatttgtgcttttttgagtctttttatatatctatatatctatatgatGTGACCCACCTGTTTGATAACTCTTGGAAAATGCATGTTTATGTTAATGTGTGACGTTGTTTTAATTAATAGCTGATGAATTATGGCCAGGCTGCTCAAGCCGGGTCGTCTTTACCTCGTCTGGAAAACCCTGCCTTGCCTAAACCACGACTTGTGGTTTATTCGCATCAaggctttttttagtttttgttggcttatttttgttggtttgttcgttttagttttagttttacgATATCGTCACTGtcacaacaaaaataattatatctccaaaatggcaccTTCATAGGAGAAGGAAGATGAGTTATATAGAAAACCTCATTGACCTATTAAGAAAtcagtataaaatattttaactctaTTGACCTGTTTACAATCAAGAACAAAAAGTGTCAAAATTGACGAACATTggcaaaaaaaatggagatacaataTTGTTGTGTGACAGTGACTATgcaggggttttttttttacagtttttttttttcaacgtttttttggTTGCTATGCTATTAAATGGTAATTGTGTTGTTTGACGAGGAAATTTATTCTCTAAGTGTCAGATTTGGACatgaaaaatgataataaatatatttatatgcctATGAtcatttgtatttttctaaacGTTTGCCTATATTTACATGGTTGCTTCTTtgtacattaaaaatgaaaaaaaaaaatacaagaagttTTATTTATGAACAGTGTTTCCTATGTGTGTTAACATGGGGGAAAGGCAGAACTCGATGGGAGATGTAACGGATTCCCAGTGTCCACAGGATTACAGACTCTTTTCTTTTTGAGCGCCTTGTCGCTGTTGGACGGTTGGCGCTTTCCAAACCCaccacatgtgtgtgtgtgtgtgtatatataaatcaaTGAACTCGGAATCACATGGCTCTTGTAGTTCGTAATATGATGAAGCAGGACTAGAATAGCACAAGGCTAAACGTTGCTGTTGAGTAACTAGGTAGCACACATTGctgcatttcttttcttttttcttttccttttccagTAGTTCTTCTTCTACACAAGGGTATTACAATCTCACGACAGTCATATCGCAATTGTATTGTACTGGGCAAAGTGGTTGTTTGAAAAATGATGAGGTGACTGGGGGGGTGGTATTGATGGGGAActtgccttaagttatttttaatCTCTTCCAATGCTGGGAGAATGATTTTGTACATATTGAGACGGTTTATACAAGAATACTTtgaatgaacattgatgtttgttatttttatgactGATGTTTATGAATAAAACTATTTGCTGAGTCTTTTAAAAA
>XM_022681812.1
CAGATAGCGGGAGAACATCGAGCTGCAGTCACACATCATCTGAGGAaaccaaaaaataacaaaacaaccaaaaacaGGGGGAATTTCCACGCTGACTTTTATTGTTCTTCTTCTCGGTTTGGATCTCAGCCTTTTTTATCGGAACCGGTTGGCAGAACAGAAGCACTCCTGCATCTCCATCATTTTTCTTTCTGCTCAATATCTCTGTTTTTCTCCTCGGATTGAAAGGCGCTCCGCCAATATGCTTAACAACATGGATTTGAACTCTCAGGACTCTTTCTACCCGCAGTTTGAGAGTTGTAACACCTCAACCATGGGAATGGCAACTCCCGGAGCCAAAGAAGAGCGGGACTTGGTGTTTATGGACGCAGCGCACTTTCAGCACGCAGACACCTCGGTAACGCCAAAGACCGAGCCGGTCTCGGCGGACCTGTACTCGCCGTGTTTGGGCCCCCGGGGAAGCTTCGACTCCTCGCTGTCCTACTCGGGCAGCTTCTACGTGGAGGCGTCACGCGGAGCCTCGTGCAGCGCGGAGACTCTGCTCAGCATGATCAGCGAGATCGTCGGCGGCGTGTCCACGAGCCCCGGCGGGAGCTCCAGCCCGCCTCCACTGTATCCCCCGGTGgggcaacagcagcagcagccgcagcCGGCGGGTCAAGGCTACGCGGACTCCGTGCCCCTGGCCGAGGCGGCCGCGCTGCCCGTGCTGGTGGTGAAGCGCGAGTTGGAGAGCGACGGGTACGAGTGGGGCACGAGCGAGTATGACAGTAACAACAACTCGAACAATGCAAACAACtcgaacaacaacaacacaaacaaCTCGAACAACAATGCAAACTCCAACAGTGGCTACTACTGCTACTTCCAACCGGAGCCCTTCCAGCACGGGGACGTCAAAGACCTGCTGGAGACCTTCAACCACGTGAACCCCGAGCCGGACTTCAAAGCCGCTGAGAGCACCGTCAAGCACGAGCAGGACTTCGCAAGCGCGTGCGTGCACGCTTTTGGCGCGTACGGTGCCGAGGAGGACCTGCACAACACCAACAGCCTCAGCACCACCAACAACAGCATCAGCACCAACAGCATCAACAGCAGCTACCTgacctcctcctcttcatcatcctcctcctcatcgTCCTCCctatcctcctcttcctcctcctccaccatcGACTCgctcctcttctcctccctgCTGCCCGAGACCTTCGCGCAGACCTACGCGCCCCGCGCGCCCAAGCCCGCCCGTGCGCGCAAAAGCGCAGCCGGCTCCCAGGCCCGCGGTACGCCGCCGCGCGCCAAAGAGAAGCCCTTCGCTTGCCCCATGGGCGGCTGCGAGCGCCGCTTCTCGCGCTCGGACGAGCTGAACCGGCACGTGCGCATCCACACCGGCCACCGACCCTTCAGGTGCCGCGTGTGCGCGCGCAGCTTCAGCCGCAGCGACCACCTGACCACGCACACGCGCACGCACACCGGCGAGAAGCCTTTCTCGTGCGACTCGTGCGGCAAGCGGTTCGCGCGCAGCGACGAGCGCAAACGGCACGCGCGCGTCCACCTCAAGCAGCGCGAGAAGGAGCTCGAGAGGCAGGCGGCCGGAGCGGCGGCGGCTGCAGCTGCGGCTGCGGCGGCAGCGGCGACCGGGGGGTGGTCGTTTCCCAGCACACGAGGGGGGCTTCTGagttaaacaaagaaacaaactattgaacaaacaaactaatGATCAAAGGCCTGAGGAGCTTCTGAGGCCCTGTAATGTAGAGCTTTGTGAAAGGGAATCTCGAGGGAAAGAGTGGGTGTAGGTGTGTAAGAGGTGAATGTAAgtgtgaacgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgcaaGAAGCTTCTTGGAACACCTTGGAAGGCATCAAAGCTTTTATGtatgtaaaaacaataaaaccgtCACATTGCAGTATAGGGCTCACAGAGTAcagcactcttaaaaataaaggctcTCCAGATGGTTCTTTCATTGATGTCATAGGCCTTGAAGAACCATGTTTATACAGTAATTCAATAATGATAcatcataaaaagaaatataataatcTGAAGCTTTAAAAGGTTTAACACATCGCCAAATCTAGACAAAATCTAACCAGAACTGGTTATTCTCCTTTGGTATCCCCCAAGGAACCATTTGAAGCCCCATTATGTTTAAGAGTTTAGGTGCTTGGCCCCCTAATGAAAGGCTATGTGATCAAAGTTTGAGCATCAGAATGGAGGCCGAGAACTCTAAAAGGAACCCAGGTCTGCTCCTTCCTTCACCACCCCTCTGTGCCGCTTGCTCTCTGTGCAGCAACTGCAGAACTGAAAGGGAAGAAAAACTCTTTGATCTCTTGATCTTCTGGGGTTCAAATTTTGGTTTACGTTTTCCATCTGACCTGCAGTTCAGCATTTGCTCCTGCTGGACAGCTCCTCCGACCTCAATTCCTCCTGAATGTATTGCACTTAATCTCCTTAAACTTTAAGAGTCTTTTAttggaaaacaaaacagaaacatttgtgcttttttgagtctttttatatatctatatatctatatgatGTGACCCACCTGTTTGATAACTCTTGGAAAATGCATGTTTATGTTAATGTGTGACGTTGTTTTAATTAATAGCTGATGAATTATGGCCAGGCTGCTCAAGCCGGGTCGTCTTTACCTCGTCTGGAAAACCCTGCCTTGCCTAAACCACGACTTGTGGTTTATTCGCATCAaggctttttttagtttttgttggcttatttttgttggtttgttcgttttagttttagttttacgATATCGTCACTGtcacaacaaaaataattatatctccaaaatggcaccTTCATAGGAGAAGGAAGATGAGTTATATAGAAAACCTCATTGACCTATTAAGAAAtcagtataaaatattttaactctaTTGACCTGTTTACAATCAAGAACAAAAAGTGTCAAAATTGACGAACATTggcaaaaaaaatggagatacaataTTGTTGTGTGACAGTGACTATgcaggggttttttttttacagtttttttttttcaacgtttttttggTTGCTATGCTATTAAATGGTAATTGTGTTGTTTGACGAGGAAATTTATTCTCTAAGTGTCAGATTTGGACatgaaaaatgataataaatatatttatatgcctATGAtcatttgtatttttctaaacGTTTGCCTATATTTACATGGTTGCTTCTTtgtacattaaaaatgaaaaaaaaaaatacaagaagttTTATTTATGAACAGTGTTTCCTATGTGTGTTAACATGGGGGAAAGGCAGAACTCGATGGGAGATGTAACGGATTCCCAGTGTCCACAGGATTACAGACTCTTTTCTTTTTGAGCGCCTTGTCGCTGTTGGACGGTTGGCGCTTTCCAAACCCaccacatgtgtgtgtgtgtgtgtatatataaatcaaTGAACTCGGAATCACATGGCTCTTGTAGTTCGTAATATGATGAAGCAGGACTAGAATAGCACAAGGCTAAACGTTGCTGTTGAGTAACTAGGTAGCACACATTGctgcatttcttttcttttttcttttccttttccagTAGTTCTTCTTCTACACAAGGGTATTACAATCTCACGACAGTCATATCGCAATTGTATTGTACTGGGCAAAGTGGTTGTTTGAAAAATGATGAGGTGACTGGGGGGGTGGTATTGATGGGGAActtgccttaagttatttttaatCTCTTCCAATGCTGGGAGAATGATTTTGTACATATTGAGACGGTTTATACAAGAATACTTtgaatgaacattgatgtttgttatttttatgactGATGTTTATGAATAAAACTATTTGCTGAGTCTTTTAAAAA

Function

NR:

description
PREDICTED: E3 SUMO-protein ligase EGR2-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0071320 cellular response to cAMP biological_process
GO:0071371 cellular response to gonadotropin stimulus biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015603022.2 False 3871 mRNA 0.48 2 10474402 10479174
XM_022681812.1 True 3874 mRNA 0.48 2 10474402 10479174

Neighbor

gene id symbol gene type direction distance location
fbxo41 fbxo41,LOC108260496,LOC107689471 coding downstream 44994 10332167 ~ 10429408 (-)
smox smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173 coding downstream 254541 10197406 ~ 10219861 (-)
LOC111195209 NA coding downstream 309508 10162402 ~ 10164894 (-)
LOC103026071 NA coding downstream 521176 9905602 ~ 9953226 (-)
mettl14 mettl14,LOC107754186,LOC107591585 coding downstream 682426 9768530 ~ 9791976 (-)
mogs mogs,LOC106609973,LOC106602766 coding upstream 19671 10498845 ~ 10507395 (-)
ston1 ston1 coding upstream 933436 11412610 ~ 11426503 (-)
rps27a rps27a coding upstream 950075 11429249 ~ 11431897 (-)
ccdc88a ccdc88a coding upstream 1032006 11511180 ~ 11574143 (-)
ppp4r3b ppp4r3b,smek2 coding upstream 1103664 11582838 ~ 11594672 (-)
G183771 NA non-coding downstream 27630 10446561 ~ 10446772 (-)
G183769 NA non-coding downstream 41211 10430741 ~ 10433191 (-)
LOC111195213 NA non-coding downstream 211402 10254325 ~ 10263000 (-)
G183753 NA non-coding downstream 226122 10248067 ~ 10248280 (-)
G183699 LOC107715185,LOC107581013,LOC107690133,LOC107745493,LOC107740227,LOC108417841,LOC107738483,LOC108421775,LOC108419634 non-coding downstream 299759 10103992 ~ 10174643 (-)
G183840 NA non-coding upstream 179823 10658997 ~ 10659334 (-)
G183854 NA non-coding upstream 365027 10844201 ~ 10844599 (-)
G183857 NA non-coding upstream 476425 10955599 ~ 11187542 (-)
LOC111195215 NA non-coding upstream 678108 11157282 ~ 11177184 (-)
G183884 NA non-coding upstream 867736 11346910 ~ 11347163 (-)
G183585 NA other downstream 622021 9845822 ~ 9852381 (-)
G183559 NA other downstream 816788 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 2971973 7490075 ~ 7502429 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other downstream 3171210 7165393 ~ 7303192 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other downstream 4047819 6422103 ~ 6426583 (-)
G183880 NA other upstream 827115 11306289 ~ 11306821 (-)
gtf2a1l NA other upstream 923533 11402707 ~ 11411644 (-)
G184051 NA other upstream 1716038 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 2747159 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 3071958 13551132 ~ 13594753 (-)

Expression


Co-expression Network