mab21l2 (mab21l2)


Basic Information

Item Value
gene id mab21l2
gene name mab21l2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 16351574 ~ 16356009 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_015606673.2
TCTCCCTTTcgtctcgctcgctctctcttttacacacactgtctctctttatGAACTTGCAGCGCTCCGCCGTGCTCACCGATTGGCCCCTGCATTTGACAGCTCCGCGCTCTGGTTGGCCTGACCCTGCGCAAAGTCACGTCCCCCTtcatagccccgccccctccatctctgtctctctccgtcTTGCTCTCTGTCTGACCATTCATAAAGTATAACACGCGCACGCGGGGCGGACAGAGACGCGCGCGCGACACGCACacctacacatacacacgcagACGCACGCGGGATACGGGGACACGCAGGTGCGTAATTGTGCGGTTGCACGGGAAGAGGGACAAGTGCGGAGGAGTACATACAAACGCACGCGCGCGCGCACGCAGATACGCACGCTCAGCTGGAACATCAAAGGGGCAGAGATGCTCGAATAACGGGACAAGACAGCAGGGACAGAGAGCCTGGGACatccccatacacacacacacacaccatacacatccctctctccttctctctctctatctatcacatagtctctctccctctctctccctccctttctttttctctctctgctgtgtTATTCCTCCTCTTCCTGCTCCAGGCTGACGTCCATCCGCTCTGCACTTCTCCCaaactttctccctctctctttcaccccctctctctccccactCTCCCtggtgtgtgtacgtgtgtgtgtgtgcgcccgCGGGCCGGAGTGTGTGTGAACGTTGGATCCCTCGGCGTACTGCGACCCTCCGGTGTTCAGCCCGGACGTCTGCCCCAACATGATCGCCACGCAGGCCAAGCTGGTCTACCAGCTCAACAAATACTACACCGAGCGCTGCCAGGCCCGCAAAGCCGCCATCGCCAAGACCATCCGAGAGGTGTGCAAGGTGGTCTCCGACGTGCTGAAGGAAGTGGAGGTGCAGGAGCCTCGGTTCATCAGCTCCCTGAGCGAGATCGAGGCGCGATATGAGGGAATGGAGGTCGTGTCCCCCACCGAATTTGAAGTGGTGCTGTACCTGAACCAGATGGGCGTCTTTAACTTCGTGGACGACGGCTCGTTGCCGGGATGTGCCGTGCTGAAGCTAAGCGACGGTCGGAAGCGTAGCATGTCGCTGTGGGTAGAGTTCATCACCGCGTCGGGGTACCTGTCCGCCCGCAAGATCCGCTCTCGCTTCCAGACGCTAGTGGCTCAGGCTGTGGACAAGTGCAGCTACAGGGATGTGGTCAAGATGGTGGCGGACACGAGCGAGGTCAGGCTGCGGATCCGCGAGCGCTACGTTGTACAGATCACGCCAGCCTTCAAGTGCACGGGGATCTGGCCTCGCAGCGCCGCCCAGTGGCCTATGCCGCACATCCCGTGGCCAGGCCCTAACCGGGTGGCGGAGGTCAAGGCCGAGGGTTTCAACCTGCTGTCCAAGGAGTGCTACTCACTCACAGGCAAGCAGAGTTCAGCGGAGAGTGACGCCTGGGTGCTGCAGTTTGCGGAGGCGGAGAACAGGCTGCTGCTGTCGGGATGCAGGAAGAAGTGCCTGAGCATCCTGAAGACGCTGCGGGACAGACACCTGGAGCTGCCCGGCCAGCCTCTGAACAACTACCACATGAAGACGCTGCTGCTGTATGAGTGCGAGAAGCACCCACGCGAGTCCGACTGGGATGAGTCCTGCCTCGGCGACCGCCTCAACGGCATCCTGCTGCAGCTCATCTCCTGCCTGCAGTGCCGCCGCTGCCCACACTACTTCCTGCCCAACCTGGACCTGTTTCAGGGCAAGCCGCACTCAGCACTCGAGGCCGCCGCCAAGCAGACGTGGAGGCTAGCCAGGGAGATCCTGACCAACGCAAAGAGCCTGGACAAGCTGTGAGAGGGACCAATTTGACTGCATAACCATTAGAactgtacaacacacacacattcatatgcAACATTCAGACACTGGCAAGGGAGTTGGCCAACCAACACCAAGAATGCTAAGAATGCTAAGAAgaccaatgcaaaaaaaagcttGAAAAAGCTTGAAAAAGCTTGAAAAGGCTTAAAAAGACCAGGGTGGATAACGTAACACACcacataccccacacacacaacataccgtacactctcacactctctaatGCGTTCAGACTCTGAACAGAGTCTTACAGGCAACGTCCAGCTATTTACATGCCATGGAGGGTAAAAAAGAGCCAAGATGACCAATGCTGAAAAGTCTGGACAAGCTAAAAAGCTGTGAGAAGAATGGACATTTataacaaccacacacacattcacctaCTAGGGatcgaacacacacacacacacacacacacatgcatacacttCTGGACGCTGGAGATCGCTGGTCAACAAATGCTAAGGACTTGAACGAGCCATTTCATCAGTTTGtgatgaaacacacacacactcactctcagtgTCTCGGAGAGAGTGAGCCGAGGCAGACTGAGAGAGAACTGAGACTCTGAGGAACTGAGGAACTGGCCCTAAAACTGGACACTGAGGGCAGAGAGCAGAGCTGAAGGTACAGACTCTCTAAACTAACGACATTGTCCTGTTCGGCTTTTACAGTTTTcacaaagtgaaaaaaaaaactcttctttCTCCTTTTGTTCTTCTTATTTAAGTAAAGTGATGCACAGTATCTTTATTAATGAGCAAattttaaaaactcttaaatgtAGCGTGCCAACTTTTCATTATCATGTGACCTAAAAgtgaaatgttaataaaatatgaacaaaaaGTTA
>XM_022682016.1
TCTCCCTTTcgtctcgctcgctctctcttttacacacactgtctctctttatGAACTTGCAGCGCTCCGCCGTGCTCACCGATTGGCCCCTGCATTTGACAGCTCCGCGCTCTGGTTGGCCTGACCCTGCGCAAAGTCACGTCCCCCTtcatagccccgccccctccatctctgtctctctccgtcTTGCTCTCTGTCTGACCATTCATAAAGTATAACACGCGCACGCGGGGCGGACAGAGACGCGCGCGCGACACGCACacctacacatacacacgcagACGCACGCGGGATACGGGGACACGCAGGTGCGTAATTGTGCGGTTGCACGGGAAGAGGGACAAGTGCGGAGGAGTACATACAAACGCACGCGCGCGCGCACGCAGATACGCACGCTCAGCTGGAACATCAAAGGGGCAGAGATGCTCGAATAACGGGACAAGACAGCAGGGACAGAGAGCCTGGGACatccccatacacacacacacacaccatacacatccctctctccttctctctctctatctatcacatagtctctctccctctctctccctccctttctttttctctctctgctgtgtTATTCCTCCTCTTCCTGCTCCAGGCTGACGTCCATCCGCTCTGCACTTCTCCCaaactttctccctctctctttcaccccctctctctccccactCTCCCtggtgtgtgtacgtgtgtgtgtgtgcgcccgCGGGCCGGAGTGTGTGTGAACGTTGGATCCCTCGGCGTACTGCGACCCTCCGGTGTTCAGCCCGGACGTCTGCCCCAACATGATCGCCACGCAGGCCAAGCTGGTCTACCAGCTCAACAAATACTACACCGAGCGCTGCCAGGCCCGCAAAGCCGCCATCGCCAAGACCATCCGAGAGGTGTGCAAGGTGGTCTCCGACGTGCTGAAGGAAGTGGAGGTGCAGGAGCCTCGGTTCATCAGCTCCCTGAGCGAGATCGAGGCGCGATATGAGTCTCAGGGAATGGAGGTCGTGTCCCCCACCGAATTTGAAGTGGTGCTGTACCTGAACCAGATGGGCGTCTTTAACTTCGTGGACGACGGCTCGTTGCCGGGATGTGCCGTGCTGAAGCTAAGCGACGGTCGGAAGCGTAGCATGTCGCTGTGGGTAGAGTTCATCACCGCGTCGGGGTACCTGTCCGCCCGCAAGATCCGCTCTCGCTTCCAGACGCTAGTGGCTCAGGCTGTGGACAAGTGCAGCTACAGGGATGTGGTCAAGATGGTGGCGGACACGAGCGAGGTCAGGCTGCGGATCCGCGAGCGCTACGTTGTACAGATCACGCCAGCCTTCAAGTGCACGGGGATCTGGCCTCGCAGCGCCGCCCAGTGGCCTATGCCGCACATCCCGTGGCCAGGCCCTAACCGGGTGGCGGAGGTCAAGGCCGAGGGTTTCAACCTGCTGTCCAAGGAGTGCTACTCACTCACAGGCAAGCAGAGTTCAGCGGAGAGTGACGCCTGGGTGCTGCAGTTTGCGGAGGCGGAGAACAGGCTGCTGCTGTCGGGATGCAGGAAGAAGTGCCTGAGCATCCTGAAGACGCTGCGGGACAGACACCTGGAGCTGCCCGGCCAGCCTCTGAACAACTACCACATGAAGACGCTGCTGCTGTATGAGTGCGAGAAGCACCCACGCGAGTCCGACTGGGATGAGTCCTGCCTCGGCGACCGCCTCAACGGCATCCTGCTGCAGCTCATCTCCTGCCTGCAGTGCCGCCGCTGCCCACACTACTTCCTGCCCAACCTGGACCTGTTTCAGGGCAAGCCGCACTCAGCACTCGAGGCCGCCGCCAAGCAGACGTGGAGGCTAGCCAGGGAGATCCTGACCAACGCAAAGAGCCTGGACAAGCTGTGAGAGGGACCAATTTGACTGCATAACCATTAGAactgtacaacacacacacattcatatgcAACATTCAGACACTGGCAAGGGAGTTGGCCAACCAACACCAAGAATGCTAAGAATGCTAAGAAgaccaatgcaaaaaaaagcttGAAAAAGCTTGAAAAAGCTTGAAAAGGCTTAAAAAGACCAGGGTGGATAACGTAACACACcacataccccacacacacaacataccgtacactctcacactctctaatGCGTTCAGACTCTGAACAGAGTCTTACAGGCAACGTCCAGCTATTTACATGCCATGGAGGGTAAAAAAGAGCCAAGATGACCAATGCTGAAAAGTCTGGACAAGCTAAAAAGCTGTGAGAAGAATGGACATTTataacaaccacacacacattcacctaCTAGGGatcgaacacacacacacacacacacacacatgcatacacttCTGGACGCTGGAGATCGCTGGTCAACAAATGCTAAGGACTTGAACGAGCCATTTCATCAGTTTGtgatgaaacacacacacactcactctcagtgTCTCGGAGAGAGTGAGCCGAGGCAGACTGAGAGAGAACTGAGACTCTGAGGAACTGAGGAACTGGCCCTAAAACTGGACACTGAGGGCAGAGAGCAGAGCTGAAGGTACAGACTCTCTAAACTAACGACATTGTCCTGTTCGGCTTTTACAGTTTTcacaaagtgaaaaaaaaaactcttctttCTCCTTTTGTTCTTCTTATTTAAGTAAAGTGATGCACAGTATCTTTATTAATGAGCAAattttaaaaactcttaaatgtAGCGTGCCAACTTTTCATTATCATGTGACCTAAAAgtgaaatgttaataaaatatgaacaaaaaGTTA

Function

symbol description
mab21l2 Acts upstream of or within camera-type eye development; embryonic cranial skeleton morphogenesis; and enteric nervous system development. Located in cytoplasm and nucleus. Is expressed in several structures, including anterior neural keel; immature eye; nervous system; neural tube; and pharyngeal arch. Used to study coloboma. Human ortholog(s) of this gene implicated in coloboma and syndromic microphthalmia 14. Orthologous to human MAB21L2 (mab-21 like 2).

NR:

description
protein mab-21-like 2

GO:

id name namespace
GO:0048048 embryonic eye morphogenesis biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_015606673.2 False 2757 mRNA 0.54 3 16351574 16356009
XM_022682016.1 True 2763 mRNA 0.54 3 16351574 16356009

Neighbor

gene id symbol gene type direction distance location
rps3a rps3a,LOC107695588 coding downstream 166762 16180070 ~ 16184812 (-)
fam160a1 fam160a1 coding downstream 210304 16119674 ~ 16141270 (-)
dctpp1 dctpp1 coding downstream 255254 16095030 ~ 16096320 (-)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding downstream 583794 15763186 ~ 15767780 (-)
pds5a pds5a,LOC107757607 coding downstream 644034 15684816 ~ 15707540 (-)
trnaw-cca_46 NA coding upstream 220814 16576823 ~ 16576895 (-)
trnar-ucg_6 NA coding upstream 220916 16576925 ~ 16576997 (-)
trnar-ccg_7 NA coding upstream 221019 16577028 ~ 16577100 (-)
trnar-ucu_5 NA coding upstream 221121 16577130 ~ 16577202 (-)
trnar-ucu_6 NA coding upstream 221223 16577232 ~ 16577303 (-)
G184902 gatb non-coding downstream 253082 16097011 ~ 16098492 (-)
LOC111195239 NA non-coding downstream 258298 15992016 ~ 16093276 (-)
G184898 NA non-coding downstream 337048 16014017 ~ 16014526 (-)
LOC111195237 NA non-coding downstream 385161 15941098 ~ 15966413 (-)
G184881 NA non-coding downstream 405116 15891780 ~ 15946458 (-)
LOC111195238 NA non-coding upstream 97876 16453885 ~ 16462187 (-)
G184939 NA non-coding upstream 106669 16462678 ~ 16468266 (-)
G184944 NA non-coding upstream 138538 16494547 ~ 16541739 (-)
G184945 NA non-coding upstream 138721 16494730 ~ 16511182 (-)
G184946 NA non-coding upstream 142350 16498359 ~ 16501566 (-)
smim14 smim14 other downstream 679620 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 970366 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 1010994 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 2259984 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 2261787 14089706 ~ 14089787 (-)
lrat lrat other upstream 542169 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 874076 17230085 ~ 17241027 (-)
G185295 NA other upstream 896258 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 939492 17295501 ~ 17300782 (-)
nutm1 NA other upstream 957361 17313370 ~ 17328889 (-)

Expression


Co-expression Network