LOC103024247


Basic Information

Item Value
gene id LOC103024247
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17843428 ~ 17847928 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681561.1
TACACTTGTAAACACGGAAGTGATTCAGAGTTTAATAACTAAAACTGAAATCAGATCATTAATGTTATtcggtggttttaatgttatggctgattggcaCACAGCTATCTGTAGTACTctgctgccctctagtggaaactcctgacctacacacacacacacacactttcatttACCAGTAAGTGAAACTAACTCGTAACTCCTCAGGTCCTGCAGGATCTGCTCTCCTGTCCAAGCCTGTCTCACTATGGAGGAACTTCCTGCGCAAGTACTGAGATCATCCATCGCTTTCCTTGCTGGGTCTGTCTCTGGACTCACCCTGGCTCTGGTTCTGATCGGATCAGTAGACGATGCATCAGAGTATCCAGGAGCTGCAATGCTCACGTACGCTGTTCTAGCTGCAGCGATGGTTGCGTCGATGTGTGGATTCATGATTCCTATGGATTTAGTTGCTGAGAAATGGAGGGACTTTTTAAATAGTCATGTGACTCAGAGGTCGATTAAGTTTATTTGTAGAGTTCTGAGAGAAGCGAAGGCCATGACGGTGCTGGAGGTTGTGTTAACGTTAGGGAACATGTTTTTGGGGGTGTTTGAGCTCTCTAGGGATCTGATCACTGAACTGGGAGTTCTTATTGCTTTTTTGTCAGAGATTTCGACGTTTTCCACAGCGATCTCAGcgattgtggtggttttctgCCACCGACTCAATGATAGATCATCCATCGCTTTCCTTGCTGGGTCTGTCTCTGGACTCACCCTGGCTCTGGTTCTGATCGGATCAGTAGACGATGCATCAGAGTATCCAGGAGCTGCAATGCTCACGTACGCTGTTCTAGCTGCAGCGATGGTTGCGTCGATGTGTGGATTCATGATTCCTATGGATTTAGTTGCTGAGAAATGGAGGGACTTTTTAAATAGTCATGTGACTCAGAGGTCGATTAAGTTTATTTGTAGAGTTCTGAGAGAAGCGAAGGCCATGACGGTGCTGGAGGTTGTGTTAACGTTAGGGAACATGTTTTTGGGGGTGTTTGAGCTCTCTAGGGATCTGATCACTGAACTGGGAGTTCTTATTGCTTTTTTGTCAGAGATTTCGACGTTTTCCACAGCGATCTCAGCGATTGTGGTGGTTTTTCTGCAGGTTCAGGCTTTAGAGCACTGGGATGGAAGTATGAGGCCTGTTTGGTTGGCGATGttggttttgatggtctttgctttGTGGAACATTTTGAGTAGGGTAGGTAAAGTTGCGAATGCTTTTATAGCGGCGTGTCTAGCCTGTTTTTACGCGTCACTGCTTGCACTGATGATCATTTTGACGCCTGTATTAATTTCTATGCACTGTTTGAGCGGTTGGCTTGTAATGGCTGTAGGTTCTGCAACTGTTGTTACTCTACAAGGTGGAGTAGGACCAGCTGCTGTTACCATACCTTACATTTTACTGAGTCTAAGCCAAGCAGACACAAAGTTAAGCCATGGCTTTTGGTTCTTGGCGTTTCTCTTTGCGGCAAACTCCAATGTATACTCAATGGATTTAAACCCAAAGAGTGTTGAATCTTTGCTCTATATTCGTAAATTAGCTTTGTTATTTGGAGTACCAGTAATAATTGCTATATCTTCTGTAGTAGCCGTGCAGATTCTCATAAGTAGAGTACCTAATAATGGAGGTAGACTCCTGGCATGGGCAGGTAAAGGTGCAGCACTGGGATCAGCAATAGCTTTACGAATGTTTGGAGAAACCTTGATATCCTACGGTTTGGTAAGCTTCATGTTCGTATGGATaacttgcctttgttttctccacAACGCCCAAAATCTTCACGTATCTCAACTCAAAGGCATGCACATCGCTACCTTCGTCATTGGGTGTGGCGTTGCTCTGTTCCCGAACCACTGGGGCTTGGTAATGACTGGTCTCGTGCTCTATACAGCAATTAAGACTCTAAAACTACTGCTGAaaatggaggaggaggacgaggacaTCACGACGCTTCCAGGAAGAGATAACATAATAAACCAAGAGAAATACGGCTTTGAGTAGAAGAACATGAGTACAATATATAAAAGCTGGAAACACAGAAGCTCCTTCAGTGACTGGTAATCTGCACCAACACCACCAGCACAGGATGAAGCTCCacctttttttgctcttttctaAAATATCAATAGTCTTCAGTCCTCATCCCGAAGAACTAcactatgtggacaaaagtgttgggactcctgtttattcattgtatctttttaaaaaaaaatcaagagtcTATctt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681561.1 True 2267 mRNA 0.44 4 17843428 17847928

Neighbor

gene id symbol gene type direction distance location
LOC103031730 LOC108442776 coding downstream 60788 17775259 ~ 17782640 (-)
LOC103045226 NA coding downstream 71211 17768380 ~ 17772217 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding downstream 105687 17708851 ~ 17737741 (-)
lap3 lap3,LOC107754151,LOC107656223,LOC107551587,LOC107702362,LOC107746009,LOC107591534 coding downstream 167988 17663351 ~ 17675440 (-)
rbm47 rbm47,LOC107702361,LOC107754149,LOC107746010,LOC107656158 coding downstream 190590 17606105 ~ 17652838 (-)
LOC103024551 LOC108442773 coding upstream 6626 17854554 ~ 17876383 (-)
LOC103031415 LOC108442772,LOC107570622,LOC106951372,LOC102787328,LOC103153163,LOC103472754 coding upstream 47635 17895563 ~ 17937588 (-)
LOC111195249 NA coding upstream 128185 17976113 ~ 17977956 (-)
LOC103023299 NA coding upstream 138341 17986269 ~ 17990384 (-)
polr1e NA coding upstream 217761 18065689 ~ 18071638 (-)
G185378 NA non-coding downstream 18397 17783867 ~ 17825031 (-)
G185380 NA non-coding downstream 69246 17773654 ~ 17774182 (-)
G185386 NA non-coding downstream 79057 17762950 ~ 17764371 (-)
G185373 NA non-coding downstream 143021 17699354 ~ 17700407 (-)
G185367 clock,LOC108434354,LOC107573987,LOC108260793 non-coding downstream 155722 17683587 ~ 17687706 (-)
G185393 NA non-coding upstream 41445 17889373 ~ 17892265 (-)
G185428 LOC103022477,LOC108434314,LOC108260671 non-coding upstream 148171 17996099 ~ 17997259 (-)
G185402 smc2,LOC107746033,LOC107702366,LOC107656012,LOC107551560 non-coding upstream 159813 18007741 ~ 18009805 (-)
LOC103047599 NA non-coding upstream 267113 18115041 ~ 18125528 (-)
G185445 NA non-coding upstream 284581 18132509 ~ 18141223 (-)
G185321 NA other downstream 511474 17330018 ~ 17331954 (-)
nutm1 NA other downstream 514539 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 542646 17295501 ~ 17300782 (-)
G185295 NA other downstream 588795 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 602401 17230085 ~ 17241027 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 170794 18018722 ~ 18050369 (-)
apela NA other upstream 175194 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 2100154 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2269498 20117426 ~ 20127092 (-)
G185943 NA other upstream 2723261 20571189 ~ 20627262 (-)

Expression


Co-expression Network