LOC103040568


Basic Information

Item Value
gene id LOC103040568
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 20401634 ~ 20413021 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681582.1
TCATCAGAACTGTGCCGGGGAGCCATCTGTTCCCTCAGTAAGACTCTAATGGGATTAAGGGCGGCACGTTCCCACTGGGTGAAGAGTTCCTCGGCTCTGAAGTTTCAAAGCAAGCTGTGATTTTTACAGATCACGCCGTGGAGATTCATCAGAGCCAAGGCTTCAGACTTTAGGAAGCTTCATAAAGGGATTTATTAAAGGATAGATGCCTGATGGAGACGATGGACATCAGACTGACCCTGAAACATCCGGTGAAGATCATACCATGGAGGAACAACAACTTCAGCCTGGTGGAGAAGGAAGCTCCTCTTTCCGAGCAGGCAGAGATCTGCGTTGGAGTCTATCTGCTGCTCTTAGGTTTGCTCTCCTGGGTCGGGAACAGTATCGTGATCCTGGTTCTGTACAGACAGAGACTCGTCCTCCAGCCTACAGACCTCCTGACCTTTAACCTGGCCATCTCCGACGCTGCCGTAGCCGTGTTCGGATACTCCAGAGGAATCGTGGAGATCTTTAATGTGTTTAGAGATGATGGATACGTCACTAAATGGATTTGGACCTGCCAGGTGAATGGTTTTATGACCTTGCTCTTCGGTTTGGCCAGTATGAACACTCTTACCATCATCAGCATCACCAGATACATCAAAGGATGCCACGCTAATAAAGCGTACTGTATAAACAAGAAcaccatctccatctccatcatctGCATCTGGACGGGGGCGCTCTTCTGGTCTATGGTTCCTCTGCTGGGGTGGGGAAGTTATACAGACCGTGGATACAGTACCTGTGAGGTGGACTGGACCAAAGCCAACTACTCCACCATCTACAAGTCCTTCATCATCTCCGTCCTCACCTCCTGCTTCATCATCCCCATGATGCTCATGCTGTTCTCCTACAGCTCAGTTCTTCACACAGTGAAGGGCAGGAACGCCATGACGGCCGACGGTTTCTTCTCTGAGAGACAGAGGAAAGTGGAGAGAGATGTAACCAGGGTCTCCATGGCGATCTGTACGGTCTTCACGCTGGCCTGGTCTCCGTACGCCGTGGTCTCCATGCGCTCAGCCTGGGGTTTAGCCACGCCCAGCACCACCAGCCTGTTCGCCCGGCTACTGGCCAAGTCCTCCTGCTTCTACAACCCCATCATCTACCTCGCCATGAGCTCCAAGTTCCGCAAGGACGTCTCCGCCCTCTCGCCCTGCTCCACCCACACCCGGGAGGAGGTCCATCTCCAGCAGTTCAAACCCCTCAAACCCACAGCTGATCCTCAGCCGGAGCAGGAGAACCACACCAAgctggaggtggtggtggaggacAGGGACTCGGGGGTGAACAGCCCCACACATACGCCTACTTTACCCAGCAGGGGGGTCTTCCACGTCCCCATCCCACCCCAGAGCAGATCCTCCGGGCTGCCGGAGATGGAGAGCGACAAACTCTGAAAGAATTCAATTTCAGAAACTTGAATAAATCCATATTTGTTACTTGAATTACTTGAATGA

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681582.1 True 1499 mRNA 0.53 6 20401634 20413021

Neighbor

gene id symbol gene type direction distance location
LOC103030999 vit coding downstream 1822 20357861 ~ 20399812 (-)
ddx21 ddx21,LOC108414772,LOC100194728,LOC107693788 coding downstream 82322 20300976 ~ 20319312 (-)
LOC111195146 NA coding downstream 114312 20282842 ~ 20287322 (-)
LOC107197720 NA coding downstream 120062 20272228 ~ 20281572 (-)
LOC103041484 LOC108443830 coding downstream 132401 20244308 ~ 20269233 (-)
LOC103040253 ick,LOC108261001 coding upstream 72685 20485706 ~ 20499567 (-)
LOC103030053 NA coding upstream 87913 20500934 ~ 20512281 (-)
LOC103039929 NA coding upstream 101549 20514570 ~ 20522866 (-)
LOC103039622 LOC105906630 coding upstream 119197 20532218 ~ 20548736 (-)
LOC103029107 NA coding upstream 138776 20551797 ~ 20570115 (-)
G185934 NA non-coding downstream 22689 20352890 ~ 20378945 (-)
G185892 NA non-coding downstream 405381 19969909 ~ 19996253 (-)
G185687 NA non-coding downstream 487464 19913912 ~ 19914170 (-)
G185671 NA non-coding downstream 630087 19771323 ~ 19771547 (-)
G185654 NA non-coding downstream 833438 19566162 ~ 19568196 (-)
G185967 NA non-coding upstream 241584 20654605 ~ 20656786 (-)
G185974 NA non-coding upstream 286631 20699652 ~ 20701062 (-)
G185985 NA non-coding upstream 325669 20738690 ~ 20739699 (-)
G185986 NA non-coding upstream 325861 20738882 ~ 20739874 (-)
G185989 LOC108437859 non-coding upstream 328628 20741649 ~ 20744673 (-)
LOC111195252 LOC108260666,LOC108412153 other downstream 274542 20117426 ~ 20127092 (-)
G185890 LOC108443824 other downstream 449838 19948082 ~ 19951796 (-)
apela NA other downstream 2303943 18023122 ~ 18097691 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other downstream 2351265 18018722 ~ 18050369 (-)
G185321 NA other downstream 3069680 17330018 ~ 17331954 (-)
G185943 NA other upstream 158168 20571189 ~ 20627262 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other upstream 227317 20640338 ~ 20678614 (-)
G185990 NA other upstream 335143 20748164 ~ 20752273 (-)
LOC103038058 slit1 other upstream 351107 20764128 ~ 20916624 (-)

Expression


Co-expression Network