pi4k2b (pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613)


Basic Information

Item Value
gene id pi4k2b
gene name pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4423892 ~ 4437198 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681685.1
TTGCGCGTGCGCACAAACCCGGCGGAAGCAGCTCGTGCAGGATGATGTGGACGAGTCCGGAGCTCGCGGCGCGCGGATACAGGCTTTAGAACAAACCGAGAAACAGAGGAATAAACCGGAGTAAACGGGATTAAAGAGGAGTAAACGGGTGAGCGGCGGGTCGGCGCGGGTTCAGCGGGTTCAGCGGGAGATGCGGCGGTGAGCGGAGCGCCGCTGGGTCAGGAGACGCCGGGAGAGAGAGCGCGGGGAGCGGACCGGAGACCCGGAAGCTCCGGCGGCATGGCCGAGGCGGGTCTGGCGCTCAGGCCGGGGGTCGCTGCTCGGGTCTCGCCCGCGGAGGAGCAGGACATCGCGCTGCTGGAGCCGGAGCCCTGCGGGGACGAGCCGGAGCTCTGCGGCGAGGaggcactgctgctgctgcccgaGCAGGAGGCGCCCTCGCCCCGCAGAGACCGGAGGGCCAGGCGGGGCGGCCGGAGCTCCTCATCCGACAGAGAGACCCTCGCCTCGCCAGgtaaCAGCAGTGGTGATTTTAACCATTTCCCGGAGGACCCCATGTTTGCAGAGATAGTGCAGCGGGCGGAGCAGGCCATTGAGAGCGGAGTGTGTCCAGAGAGGATCTCGCAGGGCTCCAGCGGGAGCTACTTTGTTAAAGACCCCAAAGGGAAAATCATCGGTGTGTTCAAACCAAAATCAGAGGAGCCGTACGGCCATCTCAACCCAAAATGGACCAAATACTTCCACAAGGTGTGCTGCCCCTGCTGCTTCGGGCGGGGCTGCCTCGTGCCCAACCAGGGCTACCTCTCGGAGGCGGCCGCCTCGCTCGTCGACCAAAAACTGGGCCTGGAGGTCGTTCCCAAAACCAagGTTGTGTCTCTGGCCAGCGAGACTTTCCACTACAACGCCATCGACCGGGCCAAGTCTCGAGGAAAGAAATACGCCCTGGAAAAAGTTCCCAAAGTGGGCCGTCGATTCCACCGGGTCGGCCTGCCCCCCAAGGTTGGCTCATTTCAGCTGTTTGTCGAGGGCTACCACGAGGCGGATTATTGGCTGAGGAAATTTGAGGCGGAGCCTCTTCCAGAGAACATGAGGAAGCAGCTCCAGTCTCAGTTTGAGAGACTTGTGGTTCTTGACTATGTGATCAGAAATACAGACAGAGGGAATGATAACTGGCTGATTAAATACGAGAAGGCAGGAGATGAAGAACAATCTGAAAAGggaaGTGAATGGAGTGAACCCAAAGACTGTGCGATTCAGATCGCAGCGATCGATAACGGCCTGGCCTTCCCCTTTAAACACCCAGACGAGTGGAGAGCAtacccATTCCACTGGGCGTGGCTTCCGCAGGCTAAAGTGCCGTTCTCCCAGGAGACCCGAGACCTGGTTCTATCCCGAATCTCCGACATGAACTTTGTACAGGACCTCTGTGAGGACCTCTATGAGCTCTTTAAGaCGGATAAAGGCTTTGATAAAACCATGTTCGAGAAGCAGATGTCCGTTATGAGGGGGCAGATCCTGAACCTGACTCAGGCTCTGAAGGACGGGAAGAGCCCCATTCAGCTGGTCCAGATGCCGAGGGTGGTGGTGGAGCGCAGCCGGGGAGGCGGCCAGGGACGGGTGGTGCAGCTCGGCAACGCCTTCACCCAAACCTTCCACTGCAAACGACCCTTCTTCACCTCCTGGTGATCGAGGAACTGAGGTACTTAAGGTGGACGAGGTGGAGGTCCGAGGAGAAATGGTGAAAACCTCTcgcctttttttctttgttttatttttttttcttctatttctgAGCCTTTTTTCTGGAGTTCTCGGAGCTTCGGCTCGTGTTGGATTAATGGACGGATGCTGGATAAAGGGAATCTCGGGTAGAGAAGTGTAAGACGTCCGACAGCCGCCTCGCTCAACTGCCAATTTTTCTATAGATATAATCTGAAGTAAGGAAGGAGGAAGAATCCGTTTAAACTTGAACTTCTGCTTGAATGTAATCCGCAAGTTTACATTTCACTCCTCCATCAGCGGCGACCGGAGGGGAGGGGGTGACCGGTGGTGTTTTAATTcaaatgaatgtatttaaagATGATGTAATGTGTCAGAATGCTGTTAGTGGTGTACACACTGAAGAAGGGGGCGGGGTTTGAACTGGTATGGTATGATAATCATTTCACCTGAAGAGTGTGCGCATTTGTGGGTGTGTGAGCGTG

Function

symbol description
pi4k2b Predicted to enable 1-phosphatidylinositol 4-kinase activity. Acts upstream of or within pectoral fin development. Predicted to be located in cytoplasm and membrane. Predicted to be active in endosome; plasma membrane; and trans-Golgi network. Is expressed in pectoral fin bud. Orthologous to human PI4K2B (phosphatidylinositol 4-kinase type 2 beta).

NR:

description
PREDICTED: phosphatidylinositol 4-kinase type 2-beta isoform X1

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016020 membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004430 1-phosphatidylinositol 4-kinase activity molecular_function

KEGG:

id description
K13711 PI4K2; phosphatidylinositol 4-kinase type 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681685.1 True 2204 mRNA 0.56 10 4423892 4437198

Neighbor

gene id symbol gene type direction distance location
c21h4orf33 cunh4orf33,c29h4orf33 coding downstream 28305 4391791 ~ 4395587 (-)
LOC103028206 NA coding downstream 132905 4280286 ~ 4290987 (-)
pcdh10 LOC108415737 coding downstream 268289 4104821 ~ 4155603 (-)
helt helt coding downstream 1034636 3385565 ~ 3389256 (-)
LOC103040979 slc25a4,LOC107656452,LOC107562743 coding downstream 1082542 3337831 ~ 3341350 (-)
hgsnat LOC108411545 coding upstream 3351 4440549 ~ 4478292 (-)
LOC103036327 LOC108415078,LOC107562921,LOC107702324 coding upstream 81932 4519130 ~ 4559920 (-)
LOC103027755 NA coding upstream 382742 4819940 ~ 4832478 (-)
LOC103031161 NA coding upstream 416451 4853649 ~ 4876273 (-)
LOC103029567 rbpja,LOC103029567,LOC108441335,LOC108260898,LOC107563830,LOC107742494,LOC105903551,LOC107562987,LOC107702317 coding upstream 453276 4890474 ~ 4904539 (-)
G182571 NA non-coding downstream 265107 4157194 ~ 4158785 (-)
G182557 NA non-coding downstream 344483 4079080 ~ 4079409 (-)
G182550 NA non-coding downstream 366552 4057080 ~ 4057340 (-)
G182540 NA non-coding downstream 426242 3997441 ~ 3997650 (-)
G182534 NA non-coding downstream 490685 3933008 ~ 3933207 (-)
LOC111195176 NA non-coding upstream 51366 4488564 ~ 4491390 (-)
LOC111195177 NA non-coding upstream 76502 4513700 ~ 4515883 (-)
LOC111195163 NA non-coding upstream 356013 4793211 ~ 4794427 (-)
G182672 NA non-coding upstream 409687 4846885 ~ 4849992 (-)
G182671 NA non-coding upstream 411073 4848271 ~ 4849196 (-)
G182501 NA other downstream 873479 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 969306 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 2711755 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 3915828 494190 ~ 508064 (-)
LOC103026712 NA other downstream 4375598 45736 ~ 48294 (-)
LOC103027068 NA other upstream 669838 5107036 ~ 5109098 (-)
G182810 saraf other upstream 740178 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 848748 5285946 ~ 5295716 (-)
G183043 NA other upstream 1674172 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1914977 6352175 ~ 6408023 (-)

Expression


Co-expression Network