LOC103036327 (LOC108415078,LOC107562921,LOC107702324)


Basic Information

Item Value
gene id LOC103036327
gene name LOC108415078,LOC107562921,LOC107702324
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4519130 ~ 4559920 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681688.1
tctctctctctttcactttctcactctcgTACTCACACTTCACATTTTCCACTTTTTCTATTTCCGTCTCTTCGCCCGCAACAATCACAttatcactctcactctctccatcaTTCCTCTCTCTTCATCACTTCCTTTTCTCATACTCTACTTGtcatttttttcaccttttcttATTACCTTGCTTCTGCTGTAttcctacctctctctctctcctctctctccctctctctcgctctatctcaCTCACACTTTCTCACACTTTCTCAGGTTGCCCGCAGTCTGTCAGTTCCCCTCTCTCTGGACATTGCGGGGGATCCAGACACTGACCGCGCTCTGGGAAAACAGCGCCTCAGTGTGGCCATCGGAGTTCTGGCGGGCGCGGCGGCCGTCATCCTGGTGATCCTGCTGGTGGTTACGGCACGGCAGTGTGGCTCCCAAGCCAAGAATGGCTACGAAGCCGGGAAGAAGGAGCCGGAGGAGGACTTCTTCAGTCCGCAGCCTCCGCCCCTGAAGCCGCAGGGCGACCGCGGACGTAAGCCAAGGCGAGACAAGCGTGGCGCCAACGGGACCGCCAAGAGCGACCGCTCCCTCTACAGTGGCATCGTCACGGTCAACGGATGCCGCCGCGGCAatgtagaagaagaagaggaggatgaggaagtCAGCAACGCCAGCGAACGGATAGCGGCCCGCTACTGCGCCGCAGCTAACGGTGACCCTTGCAGCCCTCGCCTGGGAACTCGGCGGCATCAGTCCAGTCCAGATCTGGCCCGACACTACAAGTCCAGTTCGCCGCTGCCTGCTGTCCACCTGCAGCCCAACTCGCCACCGGCCGAAGGGAAGAAGCACCAGGCCGTGCAGGAGCTGCCCCCCACCAACACCTTCACCGGCGGGAACGCCGATGCCATGAGCCTCGGGTCCGACCAGTGCTCCGACTACAGCTGCCAGAACGCCAAGTACAGCAAACAGCCCTTGCGGAGGGTGACATTCTCCGTAGCGACGCAGCCTCAGGACCCTGGATGCTACGACAGTGGGGTGGAGGACTCCGAGACCCCCAGCAGTAAGAGCTCGTCTGGGCCCAGGATCGGAGTCCTGCCGCTGCCGGAGGACGGGTACGAGAGAACGACACCAGAGGGCAGCGTGGGCGAGGAGGAACACGTGGAGAACGaccCACGGCACCTACCCGACGTCGCCCTGACCGGCAAGTGCACCCGCGACTGCGGCGAGTTCGGCCACTCCGACGCCTGCTGGATGCCCGTGCGCTCGTCGCCCCGAAAACACGCCGGAAGCGACCCCTCGGCAGGTGACGATAACAACAACCACGAGGACGACAGCGAGCCCGAGGAGatcgaggaggaggaggaaggcgCGGAGGAGGACGACGGCTCGGACCAgggcagcggcggcggcggggCCGAGGACGCCCGCGGCTCGCTCAGCAACGTGGACCCGCAGGGGACGCTGCGCAACCGCAACATGGGCGACCACAACCGCAACCTGCTGAACCGCAAGATGACCTCGGCCTCCTACGACACCTTCAGCAGCGCCGGCTTCGGCAGcggccaccaccaccaccaccaccaccaccatcaccgcGGCAACGAGCAGGACGACCTCCACCAGCGGTCGGAGGTCATCCCGCTCACTCGCACGGGAGGCGGAGACTACAAGACCGCATCGTGCCTCACGCTGGCGCGCAGGGAGGTGTACCTGTGACGCCCGAGCCCACGCCCCCAATTCCTCAGGTGACCAGCCGCTCACCTGGGCCTAACGAACTTCAGCTGAATTTCAGGACCACCTAAAGCAGTGGTCACCAACCCTGGATCTGGCAGGGTCTGGCCCGTCTCACCTGCCGCCTTGTTcagctaaaattaaacaatTGCACCATTTTCCACGGTGATCTCTAACTATCGATTGATAATCGAGTAATAATTCAGGGAGGTGCAGGACTGCCTGCACTGTAAACTATATCTCAGCAAGTGAAAGCAAGGTATTAAAAGGGTTCTGTATCGAACTAAAGCCACT

Function

NR:

description
PREDICTED: protocadherin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681688.1 True 2028 mRNA 0.61 3 4519130 4559920

Neighbor

gene id symbol gene type direction distance location
hgsnat LOC108411545 coding downstream 40838 4440549 ~ 4478292 (-)
pi4k2b pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 coding downstream 81932 4423892 ~ 4437198 (-)
c21h4orf33 cunh4orf33,c29h4orf33 coding downstream 123543 4391791 ~ 4395587 (-)
LOC103028206 NA coding downstream 228143 4280286 ~ 4290987 (-)
pcdh10 LOC108415737 coding downstream 363527 4104821 ~ 4155603 (-)
LOC103027755 NA coding upstream 260020 4819940 ~ 4832478 (-)
LOC103031161 NA coding upstream 293729 4853649 ~ 4876273 (-)
LOC103029567 rbpja,LOC103029567,LOC108441335,LOC108260898,LOC107563830,LOC107742494,LOC105903551,LOC107562987,LOC107702317 coding upstream 330554 4890474 ~ 4904539 (-)
LOC103030845 LOC108441329 coding upstream 358214 4918134 ~ 4931683 (-)
LOC103030534 LOC108441328,LOC108260848,LOC105903575,LOC105020871 coding upstream 393892 4953812 ~ 4969692 (-)
LOC111195177 NA non-coding downstream 3247 4513700 ~ 4515883 (-)
LOC111195176 NA non-coding downstream 27740 4488564 ~ 4491390 (-)
G182571 NA non-coding downstream 360345 4157194 ~ 4158785 (-)
G182557 NA non-coding downstream 439721 4079080 ~ 4079409 (-)
G182550 NA non-coding downstream 461790 4057080 ~ 4057340 (-)
LOC111195163 NA non-coding upstream 233291 4793211 ~ 4794427 (-)
G182672 NA non-coding upstream 286965 4846885 ~ 4849992 (-)
G182671 NA non-coding upstream 288351 4848271 ~ 4849196 (-)
G182706 NA non-coding upstream 290669 4850589 ~ 4851408 (-)
G182710 NA non-coding upstream 306295 4866215 ~ 4950825 (-)
G182501 NA other downstream 968717 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1064544 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 2806993 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 4011066 494190 ~ 508064 (-)
LOC103026712 NA other downstream 4470836 45736 ~ 48294 (-)
LOC103027068 NA other upstream 547116 5107036 ~ 5109098 (-)
G182810 saraf other upstream 617456 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 726026 5285946 ~ 5295716 (-)
G183043 NA other upstream 1551450 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1792255 6352175 ~ 6408023 (-)

Expression


Co-expression Network