LOC111195182 (saraf)


Basic Information

Item Value
gene id LOC111195182
gene name saraf
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5177370 ~ 5183014 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681705.1
AGGGGCGTCGCTGAGCAGCGCTGAGCTCCGGGCTGCAGCggtgaggaagaggaagtgGAGACGTGTGTTTTAGAGCTGTTTACATCAGATTACATCAGGATTTCACTGAATCAGCGTCGATTAAAACTTCTGCAGCTTTTAAACCGAGTCACAAACTTGAGCAGCACTTCTCCAGGCCTGTTTAGAAGCAGAAACGCCAGTTTAAACATGGAGAAACagatctttctctttctcctgctgAACCTCTTCCTGCCCGGCCTATACTGCTGGAATAATGgTGCGGTGTTGCTGCGTGACGTCCAGGTCCTGACACTCTATAAGGGACGCTACACCGCCGCGCGCCGCACCAGCCATCCTCAGCTGCAGTGTGTCGGAGGAACTGCTGGCTGTGGCTCTTTTGTCCCAGGTGTCCAGTGTCAGAATAAAGGATGGGATGGGGTGGATGTGCAGTGGGAATGTAAGGCAGATATGGATAACTGGTACCGATTCGGTCGGGTGGAGGTGTCGTGTGAAGGTTTTAACAGTCCTGATGACGCGTACATTCTGCAGGGCTCCTGCGGTCTTGAGTACACTCTGGAGCTCACAGCAGAGGGCAAGCAGCACCAGGGCTCCCGTGGCTCTTCTGGGTCCTCAGGGTTCGCCGGTTTTGCTTCCAGTTTCTTCCAAGATAAAGGTCACAGTGGTGGTGGATATTATCAGCAGGGTGGATCGTCAGGTGAGGGTGCTGGGGGTTTAATCGTTATCGCACTCTTCCTGTTGCTGGCGTATGGCGTCTACAAGATATTCCTGTGCAATCCCACCCATGGCCACCAGGGTTTCCAAGGAGGAGATGGGTCCACTGGAGCCTGGAGCGGTGACTACAGCAACACGGGCCCTCCACCACCCGGGTTTAAGCCGGACTACACAGCTAATTCTTCTGGTTTCGACTCCTCTGGACCAAGTTGCGGTTCCTCCGGGCAAGGTTATGGTTTCTCCGGGCCCAAATATGGATTTTCGGACTCCTACACTAGACCTCAGACTGCAGGGACTGGATTTTCCTCCCGCCAGAGCGGCTTAGGAGGAGGTGGATTCTGGACTGGAATGGGCACTGGTGGGGTGCTGGGATACCTGTTTGGCAGTCAGAGGCGTCAGCCTCCAATGGGCACGGCTAGACCTTCGTACTACAGCCCTCCTCCTGCACCCAGCACCAGCTCTGGAACTCGCACTGCCTCAGGTTTTGGCGGCACGAAGAGAAGATAAACATTGCAGATGCAGTTACAAAcctgccattaaaaaaaaaatggtgttcTGGTGTTGAAATGTGAAGACATTTTAAGAGGAAGTACTGTAAAAGAATGATTTTAAAGGATTAGCGACCTAATTTCCCACTTGTAATTGGAAACGGTGAATTCAAATGCTTTAGGATGTTCAAATCTGTTCCAATCATATACACTGGCATCTCAGTTTAATGCAGCAAGAAGAGGTATGGGTAAAATTGtgccttaatgttttattttcagtttatatAGAGCGTACAACTGGGGGTGGTGACGGGACTtactaaaaaatactaaaatatataaaacgtGCAAAAAGAACATTGGTCAAAATAATATTGAGCGGTTCATTGTGTTCAAactataaacatttaataaatgtttgtagAGGTACAACAATGAAAACATAAGAAGAAACTAAACATTGAGTTTGAGACAGTACAGTTAGCTAACCAAAGATGGAGATAATTTTATTAGTTAAAAATGTGGTACAGATATCTTTTGAGCTAttgttagctaagctaaatgTTCAGTGTCAACATTTGAATAATAAAAGGAAAAGCATTACATGTAAAAAGTTGAGTTTGCAGTgggaagtaaagtaaaaaatgtaaaaaagaaatgctagctaatatagctaacaggctaacagcGCTAGCATGGCCTGTGAATATAGCCATATTTGAAATTAACATTAGGACTAGCTAAACAAATTAGCTAAGTCTCACATTCGCTAGCTATGATAGCTTttgttagctcctctgtttgGTTAAATGAGCAGAAACCATTACACAAATTAGCTTGCTAATCAGTGAGTGCAGCTTTTGgctacttttttcttttaaaggacAATAGCGAGATATTGTTTATGGCAGCGActttatttaatagtttattaaattCCTGAGGGTGGAAAGTTTGCTGGTTTTGatatgtgactttttttttgggttccataaaa

Function

symbol description
saraf Predicted to be involved in regulation of store-operated calcium entry. Predicted to act upstream of or within calcium ion transport. Predicted to be located in endoplasmic reticulum-plasma membrane contact site. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human SARAF (store-operated calcium entry associated regulatory factor).

NR:

description
PREDICTED: store-operated calcium entry-associated regulatory factor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681705.1 True 2217 mRNA 0.45 8 5177370 5183014

Neighbor

gene id symbol gene type direction distance location
LOC111195181 NA coding downstream 18943 5155745 ~ 5158427 (-)
LOC111195261 NA coding downstream 102179 5064100 ~ 5075191 (-)
LOC111195179 NA coding downstream 118614 5036077 ~ 5058756 (-)
LOC103030534 LOC108441328,LOC108260848,LOC105903575,LOC105020871 coding downstream 207678 4953812 ~ 4969692 (-)
LOC103030845 LOC108441329 coding downstream 245687 4918134 ~ 4931683 (-)
xpa NA coding upstream 16734 5199748 ~ 5204732 (-)
LOC103026500 saraf coding upstream 25576 5208590 ~ 5213227 (-)
LOC111195262 NA coding upstream 196703 5379717 ~ 5380823 (-)
LOC103031479 mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134 coding upstream 437178 5620192 ~ 5694606 (-)
LOC111195189 NA coding upstream 652645 5835659 ~ 5844491 (-)
G182832 NA non-coding downstream 36315 5140807 ~ 5141055 (-)
G182820 NA non-coding downstream 77419 5098994 ~ 5099951 (-)
LOC111195180 NA non-coding downstream 144522 5029122 ~ 5032848 (-)
G182720 NA non-coding downstream 236243 4935610 ~ 4941127 (-)
LOC111195178 NA non-coding downstream 288284 4882275 ~ 4889086 (-)
G182845 NA non-coding upstream 62269 5245283 ~ 5283507 (-)
G182846 NA non-coding upstream 69879 5252893 ~ 5257091 (-)
G182852 NA non-coding upstream 85977 5268991 ~ 5280554 (-)
G182861 NA non-coding upstream 124347 5307361 ~ 5320223 (-)
G182869 gne,LOC106602595 non-coding upstream 148015 5331029 ~ 5334461 (-)
LOC103027068 NA other downstream 68272 5107036 ~ 5109098 (-)
G182501 NA other downstream 1626957 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1722784 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 3465233 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 4669306 494190 ~ 508064 (-)
LOC111195184 NA other upstream 102932 5285946 ~ 5295716 (-)
G183043 NA other upstream 928356 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1169161 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 1239089 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1982379 7165393 ~ 7303192 (-)

Expression


Co-expression Network