LOC111195189


Basic Information

Item Value
gene id LOC111195189
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5835659 ~ 5844491 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681725.1
TCGTTCGCGGCACGTGGTCCGCTGCCGACGTGGCTCGCGCCTGGGCGGAAAGAGCAACAGCGCTGCGAGAGCGACACCGAACACCATGTCACAAGAGGACGTAGCGGCAGAAGTGGGAGACACATCCACACATGCCGACCCTCCTCTCTTCGAGACGTCTTCAGATAAACAGACCCCCAAATCTGCACCTGAAACTAATACAGATGAGCCACCATCTGCTCCCCCGCTGTCACTGGCCGCACTAGAGCCAGAAGCAACCGGTGAAGATGTGGAGAAGCATGATTTAGCCACTCAGCCTGAAGATCCTACACAGGGCCAGTCAGCAGAAAGCACCGGGGATCACATGATGGAATGTGGCGAATCAGTGAGCTTGGAGCCAGATGTTCCTGCTGAAGCTGAGGAAGAGACCTCAGACTCGCAGTCTAAAGGTTGGGGTGGATGGAGCTCCTGGGGCAAATCTTTACTGACCAGCGCCACATCTACAGTAGGTCAGGGGTTAAACACGGTGCGGGAGAAAGCGGGCGTGGCCTTGCGGATCCGTCAGCCGTCTTCATGCGAAGAAGCTCTGGATGCTGAAGAACTTCAAGAGGCGGAGTCCACAGAACCGGATCAGACTGATCAGATGGACGAATCAGAAGCCCAGTCTAGTGATGCACACAAAGGAGTGCTGTCCACCATCACCAGCGCCGTGCAGAACACTgGTAAGTCTGTCCTGACTGGAGGCCTGGATGCACTGGAGTTCATTGGGAAGAAGACGATGATCGTGTTGGCAGAGAGTGACCCTGGCTTTAAGAAGACCAAAACACTCATGCAGAAAACCGTCTCCCTCTCCCAGATGCTGAAGGAAGCCAAAGAGAAGGAGCGTGAGAAGCTGAGCAGTCAGATGGTATCAGAACCCACGGCTCACTACAGCATCCTGTTTGATGATTACCAAGGTCTGTCCCACCTGGAAGCTCTGGAGATACTGTCCAACGAGAGCGAGGGGAGGGTTCAGGCCGCTCTCGCCTCCTTGGAGGAAGAGCAGTTGGAGCTTGTGAAGAAGGAGCTGATTGCGATTAAGGACATCTTCATCGCCAGggaggaagaggatgatgaAACGGGTGCAGAAGAAAACGGTGATCTTTATTCCCAAATTCGCTCTTTCAGCCCTCTCCGTGAGTCCTGATCCCAGATCAGAAAGGTTCACCTTAAAATTGGATAATCAAATGCAAAATCAAAAATCGAGAATAGTAGCTATAGTGatcataatttattatataatttctaATGGATTCATCTGTACTGTAtctaaattacaaatacaatatGAATTCTAAGTGACAATTCATGTCCAGTGCTTCAAATTTAACCAATCAGACAGGACATAgcttatttctttaattttgtacTGGAGCTGCAAGCTTGACCAGCTTGAGCtgactgttctgtttttttcagcAAAGAACATCTGACCAATCAACAGAGAGAACTTTTTTACCTGGTTTGTTGGGATGCATTTTGGCCCACTTGGAATCTTcactgtgtaaaaacaaaccaaatcaaGGGGGGAACACACTACCcttaactgattcagaccaaacacacaaactataGATGTAAAACAAAAGTAAGACTGTAAGATAAATTTTCCGATTTGTATCGTTATCGCAATATGAgttttcacattaaaaaaacacatcatgcTTGAAAACACAGTCAATAACAGTGAACTAGCGTAAgttagagtgagttagagcaaGGTAGGGTGAGGTTGGGTGAGGTAGAgaaagttagagtgaggtaaggTACGTCAGAGCTAGCTAGAGCAAGTAAGAGTAAAGTCAAGCTAGGTTGatcgaggtagagtgagatagattgAAGTAGACAGAGGTAAAGCAAGTTACATCAATGTGTCACGAGGTACAGTAAGTAAGAGTGGGGTTTATTGGGATTTAGTAAATTAGattgaggtggagtgaggtaaagtaagttagattg

Function

GO: NA

KEGG:

id description
ko00970 Aminoacyl-tRNA biosynthesis
ko03013 Nucleocytoplasmic transport

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681725.1 True 1977 mRNA 0.47 8 5835659 5844491

Neighbor

gene id symbol gene type direction distance location
LOC103031479 mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134 coding downstream 141053 5620192 ~ 5694606 (-)
LOC111195262 NA coding downstream 454836 5379717 ~ 5380823 (-)
LOC103026500 saraf coding downstream 622432 5208590 ~ 5213227 (-)
xpa NA coding downstream 630927 5199748 ~ 5204732 (-)
LOC111195182 saraf coding downstream 652645 5177370 ~ 5183014 (-)
LOC111195190 klf12b,klf12,LOC107668887,LOC107740907 coding upstream 21543 5866034 ~ 5890681 (-)
tbc1d1 tbc1d1 coding upstream 84247 5928738 ~ 6024934 (-)
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding upstream 186219 6030710 ~ 6048490 (-)
frmpd1 frmpd1,LOC107570223 coding upstream 208244 6052735 ~ 6100443 (-)
LOC103028109 NA coding upstream 282664 6127155 ~ 6140353 (-)
G182956 NA non-coding downstream 96 5834991 ~ 5835563 (-)
G182951 NA non-coding downstream 120540 5714694 ~ 5715119 (-)
G182949 NA non-coding downstream 121379 5713887 ~ 5714280 (-)
G182943 LOC108414272,LOC107741621,LOC107564376,LOC107559181,LOC108414004,LOC107559180,LOC108415460 non-coding downstream 125320 5709379 ~ 5710339 (-)
G182922 NA non-coding downstream 290232 5544880 ~ 5545427 (-)
G183016 NA non-coding upstream 117967 5962458 ~ 5963350 (-)
G183058 NA non-coding upstream 355191 6199682 ~ 6200189 (-)
G183121 NA non-coding upstream 511790 6356281 ~ 6367173 (-)
G183134 NA non-coding upstream 630499 6474990 ~ 6666542 (-)
G183152 NA non-coding upstream 691704 6536195 ~ 6561601 (-)
LOC111195184 NA other downstream 539943 5285946 ~ 5295716 (-)
G182810 saraf other downstream 622508 5177376 ~ 5213151 (-)
LOC103027068 NA other downstream 726561 5107036 ~ 5109098 (-)
G182501 NA other downstream 2285246 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 2381073 3395119 ~ 3454586 (-)
G183043 NA other upstream 266879 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 507684 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 577612 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1320902 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 1645584 7490075 ~ 7502429 (-)

Expression


Co-expression Network