LOC111195190 (klf12b,klf12,LOC107668887,LOC107740907)


Basic Information

Item Value
gene id LOC111195190
gene name klf12b,klf12,LOC107668887,LOC107740907
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5866034 ~ 5890681 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681726.1
ACACACACTCTGAACACTTCCTCCAGAAGCAGCAGAGGCAGTGGCAGTGTGTCTGGTCCTGACTGCAGCTCGCGGACTCTCCCCCTGCTCTCGTGCTCGCGATCCTCTCAGCTCTCGCGCTCTTTGGTTGGCTTTGGTTCTTTCAGGAGAATTTTATTTGGAAACGACGTTCAGGAaccaggaatttccaGTGGAAGCACCCATGCTCATTTGTGACTATCCAGTGAAGACAGACATGGAGACGGCAGAACCCTTTCCCCTAATCTTCACCGTGCACTCACCGTACGCCCACCAGTACCCTGCGGCCTGCTACCAGCCCCCCTACCCGCTCAGCTACCACCAGCCCTCCTACCGCAGCCCACCCCGAGCGGTGCCGGACGCCGGCCGCCTGCAGTCTCAGCTGGAGCCCGTGGACCTGTCGCTGGGCAAGAAAGCCTCTCCACCTTCACcttcctcctcatcctcatcctcctcctcccCCTCGTCCCGGGCCACACCCCCGTCCCCGCACAACTGGAGCCCCGTGACCCGgtctcactccaactccatgtCTGGATCTGCATCCGGCTCACCACAGCACCGGCTGCTGACCCCACCCATGCCCCTGCCCTACCCCTCCGTTTTGGCGCAGAGTCCTACGATACTCCTTCCTGCGCTGCTCTTTCCGTCCCCGCTGATGCACTCACCGATTTTGCTGTCTCCCAGTACACCAGAGGACCAGCTCAAACCAGTTCCTTCAGTCAAACCCGAGAACTCCACAGAGCACCGGCCAATCAAATCAGAGCCTCACCCTGAGCACGCTCAGAACACATACAGCCGGGACATCCCATCACCACCCATCACCCGGCCCTACAGCGAggGGAACACACACTCTGTGATCGTACAGACACCTAAAGTGGAGTCTCCAGATCCTCTGAAGAAGAGGCGCATTCACCGCTGTGATTTCGGAGGATGCAATAAAGTCTACACCAAGAGTTCACACCTCAAAGCccacagacgcacacacacaggagaGAAGCCATACAGGTGCGGGTGGGAGGGCTGCACGTGGAAGTTTGCGCGTTCTGACGAGCTGACCCGCCACTACCGGAAGCACACGGGGGTGAAACCGTTCCAGTGTCCGGACTGCGAGCGAAGTTTTTCACGTTCCGATCACCTCGCGCTGCACAAGAAGCGCCACCTGCTGGTTTGATCAAGCAGCGAACTGCAGAGCCGCCGCTCACGGGGCGATGAAGCGCACTTTTACAAAAGTTGCTGTCGTCTGATGGCACGTGGACCGCACTGGGAGTGGAGGAGAGATGGATGCGGGTGTGGGTAAAGTGGATAACCCacccaccaaccaaccagccaaccCATTTCCGTCCCTTTACTATGGATTGGATGTGAACACAGTTTGCAACAGTTCCATTTCTTTGAATGGAAGCACCTCAGTAATGTGCTTGCGATGCAGATCGAGTGTAGACCTTATGGAACTGTTTaactttagctctctctctctctctatttctctcactttctctctgtatttcttaaTGTCTCTCGCCCACAACCTTACAAACAGCACCCTCACTATACCCATACCCTACACCCCATACCCATTCCCTTACCCTATACTCCTCCTCAGCTACGTCAGCCATTCTCTTTCGCCCTCTGCTGGCCAAAGGGTGTAGTGCACTCTccaaacacatacagtacatcctcacacatttacacacacactcaaacacacccaGGGTCAATCCTGAATAATGTGAATTTCTCATacgtttttataatttttttttgtttctattagTCAGGAAAACCTTGTAAGTCCGTACTTTTTTGCAGTcatttttgtattatgttttcAACCTCAtctcatatatatgtatatatagtacagctctgggaaaaattaagagaccatt

Function

symbol description
klf12b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Orthologous to human KLF12 (Kruppel like factor 12).
klf12 Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription by RNA polymerase II. Located in cytosol and nucleoplasm.

NR:

description
Krueppel-like factor 12

GO: NA

KEGG:

id description
K15605 KLF3; krueppel-like factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681726.1 True 1910 mRNA 0.54 8 5866034 5890681

Neighbor

gene id symbol gene type direction distance location
LOC111195189 NA coding downstream 21543 5835659 ~ 5844491 (-)
LOC103031479 mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134 coding downstream 171428 5620192 ~ 5694606 (-)
LOC111195262 NA coding downstream 485211 5379717 ~ 5380823 (-)
LOC103026500 saraf coding downstream 652807 5208590 ~ 5213227 (-)
xpa NA coding downstream 661302 5199748 ~ 5204732 (-)
tbc1d1 tbc1d1 coding upstream 38057 5928738 ~ 6024934 (-)
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding upstream 140029 6030710 ~ 6048490 (-)
frmpd1 frmpd1,LOC107570223 coding upstream 162054 6052735 ~ 6100443 (-)
LOC103028109 NA coding upstream 236474 6127155 ~ 6140353 (-)
zcchc7 NA coding upstream 260009 6150690 ~ 6237111 (-)
G182956 NA non-coding downstream 30471 5834991 ~ 5835563 (-)
G182951 NA non-coding downstream 150915 5714694 ~ 5715119 (-)
G182949 NA non-coding downstream 151754 5713887 ~ 5714280 (-)
G182943 LOC108414272,LOC107741621,LOC107564376,LOC107559181,LOC108414004,LOC107559180,LOC108415460 non-coding downstream 155695 5709379 ~ 5710339 (-)
G182922 NA non-coding downstream 320607 5544880 ~ 5545427 (-)
G183016 NA non-coding upstream 71777 5962458 ~ 5963350 (-)
G183058 NA non-coding upstream 309001 6199682 ~ 6200189 (-)
G183121 NA non-coding upstream 465600 6356281 ~ 6367173 (-)
G183134 NA non-coding upstream 584309 6474990 ~ 6666542 (-)
G183152 NA non-coding upstream 645514 6536195 ~ 6561601 (-)
LOC111195184 NA other downstream 570318 5285946 ~ 5295716 (-)
G182810 saraf other downstream 652883 5177376 ~ 5213151 (-)
LOC103027068 NA other downstream 756936 5107036 ~ 5109098 (-)
G182501 NA other downstream 2315621 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 2411448 3395119 ~ 3454586 (-)
G183043 NA other upstream 220689 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 461494 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 531422 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1274712 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 1599394 7490075 ~ 7502429 (-)

Expression


Co-expression Network