frmpd1 (frmpd1,LOC107570223)


Basic Information

Item Value
gene id frmpd1
gene name frmpd1,LOC107570223
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 6052735 ~ 6100443 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681733.1
gcgagggAGGGCTGAGCTCAGTCTGTAAAGCAGATTAGGGCTGAGCGtctccctcctcctcttcctcctcctgtccTGCGCTCCTCCGCTAAACTGCCCTGTGAGGAAATACTCCGTCcagcagcacaaacacaccactgATCACCAGTGAGTGTGTTCTGAAGgaCTGAAAGTATTGAAAGTGTGGAAGCAAGCGAGAGACATTAGCGAGGACTCTAAAGGAACACTGATGGCCAGAAGAAGACGACCAGAAGAACATGGATTGTATTCCTAATGGATCTGGATGGGTGGCTCGCAATAAGCGGAGTACTGTAGGAATGGCCTGCACAGGCTAAATGCatttgtttaacaatttaaaaccaaTCGAGGATCATCGATAAGATCTTTCGCCCACAGTGGATGATTACAACGCTATGCAAGCCCAAGATAAGGAATCGGACGCCAACAGGAGAGCATGCAGTGATGTAGTAGAACTGGCACACTGCTGAGCTTCAGCACGTGCTGTACTGGTGGAAACTCCTGAAGCTCAGAACATCCCGAGCTGAGCTGTGTAAGAGTTGGAAGAGTGAGCTGCTGAAATGCTCCGGTTGGCCGTGGTACTTTGCGGAGCGCCGTACTGATGTGAGAGCTGTGGAACAAGCCGTGGACTGCGTTTACTAATGGATAACAAAGCACATAGAGCTGATGGTGCAACGCAAGACACATTTCCTCTCTGATGGGGCCCTGACACACGCTCAACACACTCTGGGCTAAATGGAGGAGCGGGATCGCAGCCGCTCTCCGTCACGCAGGACCAGCAGAGTGGAGCAGGTGGTGGGACGCTGGCTACGTCGTTCCAGGGACTCCACCAGCAgagaGCGTGTGATTGAAGATGGACGTGCCGCTGACACCAGTCCTCAGGAACAGAGAAGCTGTCCAATCAGAGTGACCGCTCAGATTCCATTTGACTCCGCCCTCAACTCCCACGGCTTCGCTGtgtccacacacactccacctcaGGTGCAGGAGGTTGCTGCAGGGGGTCCTGCTGATGGTAAACTTTTACCTGGTGACCAGCTCGTCAAGATCAACAACGTGGCTGTGGACGACCTGTCCACAGAGCAAGCTGCTGACATCATCAGGGAGTGTCAGGACACAATAACAATGACAGTCCTCAGAATAACAGTGGGGCCAAAATCATCCTTCATAACCCCGGAGAAAAGAGCCAAGCTGAGGTCCAACCCTGTTAAAGTGCGATTCGCTGAAGAGGTGGTCGTCAACGGTCACTCACAGGGCAACTCTCTGCTGTTCCTGCCCAACGTGCTGAAGGTTTACCTGGAGAACGGACAGACCAAAGCCTTCAAATTTGAACCCAAGACCACCGTTAAGGACATTGTGATGACTCTGAAGGAGAAACTGTCCATATCCCGCATCGAGCACTTCTCTCTGGTGCTGGAACAGCAGTACAGCATCACTAAACTCTTCCTGCTGCACGAGGAGGAGCTGATTCAAGAGgtGGTCCAGAAGAAGGAGTCTCATGACTACCGGTGTTTGTTCCGTGTCTGCTTCATGCCGAAAGAGCCAGATGACATGCTGGAGGAAGATCCTGTAGCCTTTGAGTACCTCTACCTgcagagtgtgagtGATGTGCTGCAGGAGAGGTTTGCTGTGGAGATGAAGTGTAACACAGCTCTCAGATTGGCGGCGCTGCACATCCAGGAGAGACTCGCCAGCACTGGCCAGTCCCCCAAAACACCCCTAAAGACTGTCACgaaaGACTGGGGTATTGATAGCTTTGTCTCCAGCACTCTACTGAGAAACATGCGGGAGAAGGATCTGAAGAAAGCCATCAGTTACCACATGAAGAAGATCCTTCTGCAGGAACCCAAacagaagGTGGTTACAGTAAACCAGGCCAGGTTGAACTACCTGAATGAGATGGTTGAACTCAAGTCTTATGCGGGGAAGTCTTTCAGTGCCACCATGATGCTGCAGGACAGGGAGTCCATGGTGAGTCTGTTGGTGGGGGCTCAGTACGGGGTGAGTCAGGTGATCAATCACAAGCTCAGCATCATGACCACGCTGACCGAGTTCAGCAGCATCACCAGGGTGGAGCTCACGCCGGAGTCGGAGCGCGTCAGCCTCGTCAAAATCTACCTGCAGGACATAAAGCCTATAACTCTGCTGTTGGAGTCGGTGGCTGCTAAGGACTTTTCATGTCTTATAGCTGGTTACTGCAGACTGCTGGTAGATCCTCAGATCTGTGTGTTTCCCTGGACAGCCAAGTCAAAGAGCCATCGTATCTCAGCAGAGGAAGGTTACGTATCACGATGCGGCAGTGACTCTGAAGACTCGGACACGGACATGGATGCACTACTGGCTCACGTGGCCAGTGCTACCCAGAGTGATCAGCAAGTGTCATCTACCATCAATTCAAACAACAGGGCTCAAGATTCAGGGCAGGCGGTAGAAAAGGCTGAgacaagaaaagaagaagacaaGACGGCGAAACAGAGCGAGGTGGCCAACGGAGTGGTCAAGATAACTGAGAAGGTAAGACTAGAAGGACATTCTGGGCTCATGTTTGCAAATGAAGAGGATACGTTACAATCTGAGGAAGAAAAAGACATGGACAATGAAAAGGAGGACACAGAGCGAGAACTTAAGGTGGTACCAAAGATTCCATGTGTCATCATTGTGGAGGACCCACCCTCTGACGCGTCTGATTCATGCCAGACAGACTCACGTTTCCTAGCCAGCATGTCCAGTGACTCTATGGATGCCCTAGAAGAGGACGACCTTTTGACatattgctccaccagctgcccCAGCCACTTAGATATGGGAGACCACTACCTCCACTCTGATGTGCTCCTGTCATCGTCAAGCCCAAGGCAACTGCATTGCCAAGAAAGTGATTTCCACAATGACTTGTGTTCCGCTGATGCTGATGGAGATAGTGACCCATTTGTATGTTTTGCTGCTCTGTCCAACATCGCAGAGTGTCTCCCCAGTCCCCCTGAGGCCAGTGAAGATGAGGATTATGAAGACCAGGCAGGTGAGGTAGAGGGACAAGAAGAGGATGCATCCGAGGAAGGTTCTGAAAGGACGCAAGGCCTTCATGTTTTTACATTTGAGCAAGGAGACACACGATGCTATTACAAGATCTGCTCTAATCTTACACCTGATAGTGCCCGCAGCCCTCCCAGACCTCCGTCTCCTAACTCccagaaagaggaggagggtAATGGAACAGAAGAACAGAGGCGGGAGCCTGACCCTATCCCCATCCTTCAGCCTCCCCCTGGGTTTGGAGACAGTAGCTCAGACGATGAGTTCTTTGACGCCCAGGAAAGATTCACATCTCCTGAGGAATCTTCTTCTACAGCCTTGAGTAGAGaAAATTCAACAGAATATGGCACCATGAAGCGTACACTTAGTCTAAGTGACATTGGAATTAGTGTTTGTGAACAAGGGATGACAGAGGAAGAAATGACAGAACAGAAAGAATATGAATTACGTATGGAGATGTCAAATGAACTTTCACGGTTCAACAAGAGATACAGAAAACGTCGTTCATTCATGGAAACAGATTACACATCTTTAGTATCTTTCCCTGAAGACAACTGTAATCAAATCGCAAATCACAGGTCAGGACCTGATAACAAGGGAGAAGGTCCAATCACTCGTTTTGACGTTGGGCTATCAAATCAAAGCCCTTGTCCCACAGTTTCATCCCTAAACAATGCCGAAGGAGAGCCAGCACAATTGGAGACCAAACCCATCACACCGTCCAGGCTGAGTAAGCCTGAAAGCCAGAATCTTATGGACGGCAACAAGGTCAACAAAGCCAGTCAACGGAAACAGCAGCTTATGTTAATGGAACCCGATTCCATGGAGTTTAAGTCTGTCACGGAAGTCATATCTAGTGTCTCACCTGCTATTGTAGCATTGCGGACCAGTGGAGAGCCTAAAGCCAACAACATCAACAGTTCTGATCTGGCTGAAGAAGGTGCAGTAGGAGATTTGCTTGAGGGGTTCCTTGCTGATCATTTGTTCTTTTCCACGTCTCGAAGTCAGGGTGATAGCAGTTTACATGTGAAAACCAACGACCAGGAGTCATTCAAAAAGGGTCTGTCCCAAGATACTTTGGATAAGCTAAAGGCTTGCTCTCTCCCACGACTGGGCCAAGCATCCCTGTCTGGCTCTTTGTACCTTCAAGTCCCAACCATATCCTGCACCCCAAGCCCAGATGTGCACAGGGAACAAGATCATCTGGGAATGCGTAATCAAAAAGGACAGTTGCAGCCAACGGAGAGAATCAGAAGCCACAGTATGTCTTCTGCATTTGGGAGAAGAGCTCCTCTTTGCCCAACAAGGCATCTCTTCCCTCAAAGAGAAACTCTGTTCCGAACAAAAGAACCAGAGTCTGATGACACAGACAGTTCCAGTGATCCGTCCCTCCAAGAAGTGTCCTCTAGTGTTCCATCTGCAGACCCCACCCAGGGATATTTATTTGCACCATGTTCACCCGGTATTCTTGGTAGTCTTTCTGCTTCAACACTGCGGGGAAAGATCCAGAACTTGCCTCTCTACCTCTCACGTTCCCATGAAGTGCTAGATGGAAATGAAAGTCTTAGTGGTATTGCTAAACCAGCAAGAAGGTTTTCTGAGACACGGCCAAGAAGGAAAGACGTGGATGTTTTGAAAGAGGAAACTGAGGAAGTTACCTCAACTGGTGCAGCTTCTGAGGTAACTGAGCTAAAAGTTGTAACCATTGTATCTGAAGAGGTTACAGAGGTGATTGAAGAGGTCAGAGAGGTAAGCCACAACAGTACTCGTGTGCACGGACAGCAGAAGGCAGAAGCCAAACCACAAGAGCATCCACAAGCATCTAGTCCATCTCCTTGCCCACAGTCAGTGGCCCCTGCCAAGATCAGCACTTCATCTGTAGTGGTTACTACGCAGAATCTGAATGGACCATGGGGTGTGGTGACTTCCAGAGAGATAGGAGGATTACAAGGGGGAAGTGGCCCCCTTGTGGGCACACACTCCCATCTTTTGACCTCTGGCTGTGGGGTTTTTACAAACTGTGATTCCAAGCCAACAAACACACAGCCCAAAGCTCTGCCAAGCCCATGCCCACATGGGAAACCTGATCTTAGCTGCAGTTCAGCCCTAGCAATGGGGTGCGAGACAGTTATGGAGGGTGCTCAAACACCACTGGAGGTTTGCGGATGCCAAGCAGTGTACACCAACTGCTTCAGTGGCGTTCTGGATAGTGGCAGCTTTGACGATGAGCTGACTGTCTACGAGTTCTCCTGCAGAACACAGCAGGAAGAGAGTGGCCAAGCAGCATTGATGAAATCCATTCCACTACCTTCTTCCCTCTCTGGTTCGCCAGCTTCCTTTTCACCATCTTCACCCCTTCCTTCATTTCCTTGTGTGGTCTTACCACCATCCTCATCCACAGAACTTGGCCCTCTTCTTTCACCACTGCATAACCATGACTGTTTCCTCCCTGACGCGCATGAAGATGCAATTGCCGGCCTACTGTCCCGGCGCTACCCTTTACCACCCACAGGCTTCCTGGCTTTACAGAGGGACGTTGACACACTGTTAACAATCTTGGCAGGTGCAATGAAGGACCAAGATGGTGTCCTGGAGCATCCACGAGACACCTGTGCTGCCCACTTTTCTGAAAACAAGCGGAGGTTGCATACAGAGGCTCGGGGGCTTCTGGCCGGCTGTCAGCAAGTGGTAAGGGTCGAGCAGACCCCAGCAGAGACGCTGCAAGCTTTAGCTGAGAGTTTTCACTCACTGGTCCAGTTGACAAGCGTATGTCTGAGTTTCTCGAGCTGCCAGAGATGCCAGGAGCGTCACACTCAAGCTCTGTCAGGACTTGCAGATCTGGCACAGACCTACCAAGAATTTGCACGGGCAGCGGAGCAAGTGGGCACCACTACAGGAAAGAGGACTTGCCATGATCTCAGTATTAAGCTCCTGGCCCGCCAGTGCACAGCACTTACGACTTCAGTCTTCTGCCTCACACAGCTGTTCCGCACGCTCACTGCCCTTTGACCTCTGAACTGTGATGTTAGGAGTGTTTCTTTTGGACATCAGACCTTAGGGTGGCACGATCTCTTGCATATGAATGAAATCTTAGCAGATATTAATTAAAGTACATGATTGTGCAAGTACAGCAGGTAAAGCACACGTGCCGAACCAATCCTGATCTTGGAGATCCTGGTCTACCACCCTAAAGGCCTTCATTACCTGGTTCAGATGGGCAAGATTAGGCTTGAAGCCTCAGTGTTACAGATAGATCACCAAGCACTCCTGAGATAAAGAGGAATTCCACCAATTAATTCCATCAGTAAAGTAAACTAGAAACATTTGAGAGTATTGTAATGGAACAACTCAATTCTAGAGAAACTAGTGACATTTCGTCACTGTGGTAATGCCATCAagcttaattgccgacccctgctctagatTATTTCCTCACACCAAACTCCCTACTCC

Function

symbol description
frmpd1 Involved in establishment of protein localization to membrane and regulation of G protein-coupled receptor signaling pathway. Located in plasma membrane. Part of protein-containing complex. Colocalizes with cell cortex.

NR:

description
PREDICTED: FERM and PDZ domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K23954 FRMPD1; FERM and PDZ domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681733.1 True 6504 mRNA 0.50 17 6052735 6100443

Neighbor

gene id symbol gene type direction distance location
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding downstream 4245 6030710 ~ 6048490 (-)
tbc1d1 tbc1d1 coding downstream 27801 5928738 ~ 6024934 (-)
LOC111195190 klf12b,klf12,LOC107668887,LOC107740907 coding downstream 162054 5866034 ~ 5890681 (-)
LOC111195189 NA coding downstream 208244 5835659 ~ 5844491 (-)
LOC103031479 mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134 coding downstream 358129 5620192 ~ 5694606 (-)
LOC103028109 NA coding upstream 26712 6127155 ~ 6140353 (-)
zcchc7 NA coding upstream 50247 6150690 ~ 6237111 (-)
melk melk,LOC107750464 coding upstream 279960 6380403 ~ 6403796 (-)
LOC111195268 NA coding upstream 1035332 7135775 ~ 7149290 (-)
LOC111195269 NA coding upstream 1063995 7164438 ~ 7168366 (-)
G183016 NA non-coding downstream 89385 5962458 ~ 5963350 (-)
G182956 NA non-coding downstream 217172 5834991 ~ 5835563 (-)
G182951 NA non-coding downstream 337616 5714694 ~ 5715119 (-)
G182949 NA non-coding downstream 338455 5713887 ~ 5714280 (-)
G182943 LOC108414272,LOC107741621,LOC107564376,LOC107559181,LOC108414004,LOC107559180,LOC108415460 non-coding downstream 342396 5709379 ~ 5710339 (-)
G183058 NA non-coding upstream 99239 6199682 ~ 6200189 (-)
G183121 NA non-coding upstream 255838 6356281 ~ 6367173 (-)
G183134 NA non-coding upstream 374547 6474990 ~ 6666542 (-)
G183152 NA non-coding upstream 435752 6536195 ~ 6561601 (-)
G183158 NA non-coding upstream 491579 6592022 ~ 6636312 (-)
LOC111195184 NA other downstream 757019 5285946 ~ 5295716 (-)
G182810 saraf other downstream 839584 5177376 ~ 5213151 (-)
LOC103027068 NA other downstream 943637 5107036 ~ 5109098 (-)
G182501 NA other downstream 2502322 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 2598149 3395119 ~ 3454586 (-)
G183043 NA other upstream 10927 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 251732 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 321660 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1064950 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 1389632 7490075 ~ 7502429 (-)

Expression


Co-expression Network