LOC111195209


Basic Information

Item Value
gene id LOC111195209
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 10162402 ~ 10164894 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681801.1
CTGGGCAAGATCACATTCTTTACTGACAGTTAGGTGGTATTGGGTTACATTTATAACAGGTCCAGAAGGTTTTATGTGTTTGTGAGTAATCGCGTACACCGGATCTGGCAGTCCACTCACCCGAATCAGTGGAGGTATGTTGCCACCAAGAACAACCCAGCAGACCATGCCACAAGGTCTGTGTCTGCAAGCCAGCTGCAAGCAACCAATTGGCTTACCGGACCTAAGTTCTTGCTACAGCCACACAGCTCCTCATCACCTGACGATGGCTTTCAGTTGATCGATCCAGAGGCAGACCCAGAACTTCGTCCTGAGGCCACAACTTTCCTGACCAAGGTTGCAGGGACTCTCAACGCTTCGAGAAGTTCTCTTCCTGGGAACGTTTGACTAGAGCTGTAACACGTCTAAGGCACATAGCCCAAAGTTTCCAAAACCCAACACCTGACACGGGATGTGTCGGATGGCATCTCTGCAAGAAAGGAGTAACATCTTCAGAGCTTACTGCCGTAGAGCGCGTCATCATTAAAACTGTACAACATGAAGTGTACGCAGATGAGATCAAATGTATCCAACAGGGGCAAGACTTACCTGCACAGAGTCTTCTGAAGAAGCTTCACCCTGTGGTAGATGCAGAGGGTCTGCTACGCGTTGGAGGCCGAATCACTCGCTCGTACTTGCCTACTGCTGAGACTCACCCACTTCTTATTCCTGGCAAGCACCATGTCACCACATTGCTCATCCGTCACCACCACTTCAGAGTGCAACATCAAGGAAGGCACTTCACTGAAGGAGCAGTGCGTGCAAGTGGTCTATGGATAGTGGGAGCCAAGCGAGCCATCTCCAGCGTGGTGTTCAAGTGTGTGATATGCAGGCGGTTACGTGGCAAATTGGAACAACAGCAAATGGCAGACCTTCCTCAAGAGCGCCTAAAGCAGGAACCCCCCTTTACCTACGTAGGGTTAGATGTCTTCGGACCCTGGGAAGTCGTCACCCGACGGACACGAGGTGGTAGTGCGAACAGTAAGAGATGGGCAGTTCTGTTCACGTGCATGTCCACAAGAGCAGTTCACATAGAGGTGATTGAGACAATGAGTGCCTCAAGCTGCATCAATGCCCTCCGCAGGTTTTTCGCAATTAGGGGACCAGCAAGACAGTTACGTTCCGATCGAGGAACCAACTTTGTGGGTGCCAACTCCAACTTGGACGCTGCTATGGAAGCCGAGGAAGAAAGTGTGAATACTTACCTGTGCTCTCAGAAGTGCACCTGGGTCTTCAACCCGCCGCACGCCTCCAACATGGGTGGAAGTTGGGAGCGCATGATAGGTACAGCGCGTCGTATCCTGGATTCAATGTTGCTCCAAGCTGGAAGGTCAAAGGTCACTCATGAAGTCCTATGCACGTTCATGGCTGAAGTCACTGCTATAATTAACTCCAGGCCATTAATACCAGTCTCCTCAGATCCTGAAGCTCCACTGATACTTACTCCTGCGATGCTGCTCACGCAGAAGAGTGGTACTCCACCAGCTCCTCCTGCAGACGGCTCAGAAACCAGTCTGTTGAAGCATCAGTGGAAGAGAGTACAGGCATTAGCAGAGACATTTTGGGCAAGATGGAGGCGGGAGTACTTGAATGTACTTCAAGCCAGGCAAAGGTGGCACGAAAGGAAACGGAACCTCAAGGAAGGAGATATAGTGTTATTGAAAGACAGGCAAGCCAGAAGGAATGAGTGGTCCATTGGAAGGATCATGAAGACCTTTCCAAGTGATGATGGACTTGTCAGAAAAGTGGATGTCAATGTCGCATCGCATCATCCGCCGAAGACTTACCTGAGACCTGTTTCTGACGTGGTCCTACTCCTAGAGGCAGAGACTGTTTAGGTTAAGGAGGTTTGGCATCTAGTGATGCCAGGCGGGGAGTGTGATGCCACGGGGCACATATTTTGaaaaaggcttttattttgacacagtaATTTCTCTAATTGTGgtatgatgtcacttcctgggTGTAGCCACTTTTCAGTTGTTCAAGGTGAAGGACACATGTCAGCTCAGCTCTTCTGAAACTTATCTTTCTCTTTTGGTGTGGCATTGCTAttttaccTTCTTTTCAATAAATCTCGCTAACTACAAGACCTGCCTCTTCCTTGGGGGATTTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681801.1 True 2156 mRNA 0.49 2 10162402 10164894

Neighbor

gene id symbol gene type direction distance location
LOC103026071 NA coding downstream 209176 9905602 ~ 9953226 (-)
mettl14 mettl14,LOC107754186,LOC107591585 coding downstream 370426 9768530 ~ 9791976 (-)
prss12 prss12 coding downstream 396444 9676597 ~ 9765958 (-)
spock3 spock3 coding downstream 1099576 9013877 ~ 9062826 (-)
LOC111195270 NA coding downstream 2677644 7481599 ~ 7484758 (-)
smox smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173 coding upstream 32512 10197406 ~ 10219861 (-)
fbxo41 fbxo41,LOC108260496,LOC107689471 coding upstream 167273 10332167 ~ 10429408 (-)
LOC103029885 LOC108434384,LOC108435548,LOC107702154 coding upstream 309508 10474402 ~ 10479174 (-)
mogs mogs,LOC106609973,LOC106602766 coding upstream 333951 10498845 ~ 10507395 (-)
ston1 ston1 coding upstream 1247716 11412610 ~ 11426503 (-)
G183712 NA non-coding downstream 3685 10151636 ~ 10158717 (-)
G183658 NA non-coding downstream 88248 10073771 ~ 10074154 (-)
G183656 NA non-coding downstream 88736 10073282 ~ 10073666 (-)
G183640 NA non-coding downstream 116911 10045212 ~ 10045491 (-)
G183637 NA non-coding downstream 125061 10036572 ~ 10037341 (-)
G183718 NA non-coding upstream 8249 10173143 ~ 10174071 (-)
G183753 NA non-coding upstream 83173 10248067 ~ 10248280 (-)
LOC111195213 NA non-coding upstream 89431 10254325 ~ 10263000 (-)
G183769 NA non-coding upstream 265847 10430741 ~ 10433191 (-)
G183771 NA non-coding upstream 281667 10446561 ~ 10446772 (-)
G183585 NA other downstream 310021 9845822 ~ 9852381 (-)
G183559 NA other downstream 504788 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 2659973 7490075 ~ 7502429 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other downstream 2859210 7165393 ~ 7303192 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other downstream 3735819 6422103 ~ 6426583 (-)
G183880 NA other upstream 1141395 11306289 ~ 11306821 (-)
gtf2a1l NA other upstream 1237813 11402707 ~ 11411644 (-)
G184051 NA other upstream 2030318 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 3061439 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 3386238 13551132 ~ 13594753 (-)

Expression


Co-expression Network