gtf2a1l


Basic Information

Item Value
gene id gtf2a1l
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11402707 ~ 11411644 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022681855.1
ACTAGTCTCACGTGGTGGTACCAATTAATCCAGTGTCTGAATGTTTGGTCAAACTGAACTTGCTTCGTGGTACAGCCCTCTGTAGCATTTGTGTTGATCAGGTTAAAGCTAAATTCACACTAAAGACCAGAGTGAGAGTCTGTGAAGGTGAACAGCTACTCCATGATAACAGCTTGTGGTAGTGTTATCTACCTTTACCTGGGGAAATGTTCTCAAACTCAAACACTTTACCTAAACTCTACCTCTCTGTCATTGATGATGTGATGGAGAATGTTCGTGAACTGTTTCTCGAAGAAGGAATAGAAGAGCAAGTGCTAGATGACTTGAGGCAGCGGTGGGAGTCCAAAGTCTTGCAGTCCAAAGCTGTGGAAGGCTTTTCAAAAGACAACACCAATCCATCAAATTTTGTTCTGCAACTCCCAGCAAATTACTCTCAAACTCTTCAGAAAACAATAGCTCCTGTGGTTATTCCTGCTGGGCAGCTTGCACAGAGTTTCGCTGCAAAAGGGAGCACTATTGCAACATTCTCTCTCCCACCTGGAGTTACCTATCCTGTTCATATTCCTGCTGGAGTGACTCTACAGACCGCTTCAGGTCATCTCTACAAAGTCAATGTTCCAGTAATGGTGACCAAGGCTCCGAGTTGTCAGCGCGTCTCCGCCCAAGCTAATCAGCCCCTCGTGGAGCAGAGTACAGTTTCCAGCACCATCATTCACAACATACCTGCTCAGGTGACTGGCCCGTGCCCCCAAACTCTCCCTGTAACTCAAACCTCTCAACCAGCCCTGCCAACACACCAGCAGAGCCAGAGCCAAGTACCCCAGCCGCCCAGTATCTCTCTGGATCAAAGCACCAGGCCTGAAGCCCCTGCTACCCCAGAGCCTTCCATTAATCAGCAGTACTCGCAGTGGCCTCCAGAAAGCCCCAGCGAGTTCACCCTGGATGGCATTGAGTTCAGCCCCCAGCCTCTGGATATGAGCATGTCCTCTCCACTAACCACACAGCTGTCTACTGGGCTGCTGGGAGCATCAGGGAATGCGCAGGTGTCAGAGTTTGGATGCAGTGTGCAGGAGATGGTGGAGAGAGCTGTTAAAGCAGAAGAAGAACCTGTAGCCTTGGCCAGCAGTGGCGACACCATGAGTCTTCTGCCAGACCTGGAAAGAACACCTGACAGTGCAGTTAAGCTTGAGATGGAACTCCTGAGGGACTACAACTTCAACGAGTTAACCAACATAGTACAAATGGACGGAGCTTGTGACAGCAGCTCTGAGGCAGGAGATGAACCACAGGAGCTGGAGGAAGAATCAGGAGCTATTGGAGAAAATGAGTTCCTGGGCATGATCAATGCAGAGGCCCTGAAAGCACTTCAGGGGGCTGGTGGCAGCAGTGACCCCAGTGACAGCTCCagcagcaacaacgatgagtctgACCTGAAGGAGTTGGAAGAGGAGGATCCACTGAACTCTGGTGATGATGTGAGTGAGCAGGATATTCCGGAAGTCTTTGACACTGAGAACGTGGTTGTTTGTCAGTATGATAAGATTCACCGCAGTAAGAACAGATGGAAGTTTTACTTGAAAGATGGTGTTATGTGCTACAGAGGAAAGGACTATGTTTTCTCCAAGGCTGTCGGTGAAGCTGAGTGGTTCTGCACAGGGTTTGGCTGTTGCCATGATTGTAGTTGGAGTCACATTTACATGTCTGATGAGCGTCTGAACAGAACACAGCTGCAGGCCCACCTCActtcagtcaggattggaaaaaGTAAGGAGGTTAAGGGTAAGCAGGCTACTTAAGGATTTTGATTCAACAACGCCACCTGTAGGTCATTTAGTTTTGTATTAGTTTTGTGATGAAATACTTTTTATGGTATAAAGACCTATAAAGTGGGGCTGGGcgatattgcaaaaaaaaaaaaacactcaaacttCTTTACAAATatccaagattttt
>XM_022681856.1
TAGTCTCACGTGGTGGTACCAATTAATCCAGTGTCTGAATGTTTGGTCAAACTGAACTTGCTTCGTGGTACAGCCCTCTGTAGCATTTGTGTTGATCAGGTTAAAGCTAAATTCACACTAAAGACCAGAGTGAGAGTCTGTGAAGGTGAACAGCTACTCCATGATAACAGCTTGTGGTAGTGTTATCTACCTTTACCTGGGGAAATGTTCTCAAACTCAAACACTTTACCTAAACTCTACCTCTCTGTCATTGATGATGTGATGGAGAATGTTCGTGAACTGTTTCTCGAAGAAGGAATAGAAGAGCAAGTGCTAGATGACTTGAGGCAGCGGTGGGAGTCCAAAGTCTTGCAGTCCAAAGCTGTGGAAGGCTTTTCAAAAGACAACACCAATCCATCAAATTTTGTTCTGCAACTCCCAGCAAATTACTCTCAAACTCTTCAGAAAACAATAGCTCCTGTGGTTATTCCTGCTGGGCAGCTTGCACAGAGTTTCGCTGCAAAAGGGAGCACTATTGCAACATTCTCTCTCCCACCTGGAGTTACCTATCCTGTTCATATTCCTGCTGGAGTGACTCTACAGACCGCTTCAGGTCATCTCTACAAAGTCAATGTTCCAGTAATGGTGACCAAGGCTCCGAGTTGTCAGCGCGTCTCCGCCCAAGCTAATCAGCCCCTCGTGGAGCAGAGTACAGTTTCCAGCACCATCATTCACAACATACCTGCTCAGGTGACTGGCCCGTGCCCCCAAACTCTCCCTGTAACTCAAACCTCTCAACCAGCCCTGCCAACACACCAGCAGAGCCAGAGCCAAGTACCCCAGCCGCCCAGTATCTCTCTGGATCAAAGCACCAGGCCTGAAGCCCCTGCTACCCCAGAGCCTTCCATTAATCAGCAGTACTCGCAGTGGCCTCCAGAAAGCCCCAGCGAGTTCACCCTGGATGGCATTGAGTTCAGCCCCCAGCCTCTGGATATGAGCATGTCCTCTCCACTAACCACACAGCTGTCTACTGGGCTGCTGGGAGCATCAGGGAATGCGCAGGTGTCAGAGTTTGGATGCAGTGTGCAGGAGATGGTGGAGAGAGCTGTTAAAGCAGAAGAAGAACCTGTAGCCTTGGCCAGCAGTGGCGACACCATGAGTCTTCTGCCAGACCTGGAAAGAACACCTGACAGTGCAGTTAAGCTTGAGATGGAACTCCTGAGGGACTACAACTTCAACGAGTTAACCAACATAGTACAAATGGACGGAGCTTGTGACAGCAGCTCTGAGGCAGGAGATGAACCACAGGAGCTGGAGGAAGAATCAGGAGCTATTGGAGAAAATGAGTTCCTGGGCATGATCAATGCAGAGGCCCTGAAAGCACTTCAGGGGGCTGGTGGCAGCAGTGACCCCAGTGACAGCTCCagcagcaacaacgatgagtctgACCTGAAGGAGTTGGAAGAGGAGGATCCACTGAACTCTGGTGATGATGTGAGTGAGCAGGATATTCCGGAAGTCTTTGACACTGAGAACGTGGTTGTTTGTCAGTATGATAAGATTCACCGCAGTAAGAACAGATGGAAGTTTTACTTGAAAGATGGTGTTATGTGCTACAGAGGAAAGGACTATGTTTTCTCCAAGGCTGTCGGTGAAGCTGAGTGGTGAGCTGGGAAAATGTGGAACACAGTCTTTTGTACatcacagagaaaaacactaTGGTACTATTTAAAAGTGGagaatattgtttattgtattatttaaattaacggctttatttatgtatatttttggtttatttactgTCTTAATGCTTAGATTTTGCAAAGAGTACTGAAACTGTATAAAAATccctgtttaatttatttaattaatgtatattCTTTGGGTTAAAGGGGTGGTGTTCAGACTGCGCTCTCAAAATGTAATACTTGGTTCTTGGTATGTTCTCACTGTTTGAGTTAAATCACTGCAGGAAAATCTAAA
>XR_002651529.1
TAGTCTCACGTGGTGGTACCAATTAATCCAGTGTCTGAATGTTTGGTCAAACTGAACTTGCTTCGTGGTACAGCCCTCTGTAGCATTTGTGTTGATCAGGTTAAAGCTAAATTCACACTAAAGACCAGAGTGAGAGTCTGTGAAGGTGAACAGCTACTCCATGATAACAGCTTGTGGTAGTGTTATCTACCTTTACCTGGGGAAATGTTCTCAAACTCAAACACTTTACCTAAACTCTACCTCTCTGTCATTGATGATGTGATGGAGAATGTTCGTGAACTGTTTCTCGAAGAAGGAATAGAAGAGCAAGTGCTAGATGACTTGAGGCAGCGGTGGGAGTCCAAAGTCTTGCAGTCCAAAGCTGTGGAAGGCTTTTCAAAAGACAACACCAATCCATCAAATTTTGTTCTGCAACTCCCAGCAAATTACTCTCAAACTCTTCAGAAAACAATAGCTCCTGTGGTTATTCCTGCTGGGCAGCTTGCACAGAGTTTCGCTGCAAAAGGGAGCACTATTGCAACATTCTCTCTCCCACCTGGAGTTACCTATCCTGTTCATATTCCTGCTGGAGTGACTCTACAGACCGCTTCAGGTCATCTCTACAAAGTCAATGTTCCAGTAATGGTGACCAAGGCTCCGAGTTGTCAGCGCGTCTCCGCCCAAGCTAATCAGCCCCTCGTGGAGCAGAGTACAGTTTCCAGCACCATCATTCACAACATACCTGCTCAGGTGACTGGCCCGTGCCCCCAAACTCTCCCTGTAACTCAAACCTCTCAACCAGCCCTGCCAACACACCAGCAGAGCCAGAGCCAAGTACCCCAGCCGCCCAGTATCTCTCTGGATCAAAGCACCAGGCCTGAAGCCCCTGCTACCCCAGAGCCTTCCATTAATCAGCAGTACTCGCAGTGGCCTCCAGAAAGCCCCAGCGAGTTCACCCTGGATGGCATTGAGTTCAGCCCCCAGCCTCTGGATATGAGCATGTCCTCTCCACTAACCACACAGCTGTCTACTGGGCTGCTGGGAGCATCAGGGAATGCGCAGGTGTCAGAGTTTGGATGCAGTGTGCAGGAGATGGTGGAGAGAGCTGTTAAAGCAGAAGAAGAACCTGTAGCCTTGGCCAGCAGTGGCGACACCATGAGTCTTCTGCCAGACCTGGAAAGAACACCTGACAGTGCAGTTAAGCTTGAGATGGAACTCCTGAGGGACTACAACTTCAACGAGTTAACCAACATAGTACAAATGGACGGAGCTTGTGACAGCAGCTCTGAGGCAGGAGATGAACCACAGGAGCTGGAGGAAGAATCAGGAGCTATTGGAGAAAATGAGTTCCTGGGCATGATCAATGCAGAGGCCCTGAAAGCACTTCAGGGGGCTGGTGGCAGCAGTGACCCCAGTGACAGCTCCagcagcaacaacgatgagtctgACCTGAAGGAGTTGGAAGAGGAGGATCCACTGAACTCTGGTGATGATGTGAGTGAGCAGGATATTCCGGAAGTCTTTGACACTGAGAACGTGGTTGTTTGTCAGTATGATAAGATTCACCGCAGTAAGAACAGATGGAAGTTTTACTTGAAAGATGGTGTTATGTGCTACAGAGGAAAGGACTATGTTTTCTCCAAGGCTGTCGGTGAAGCTGAGTGGTGAGCTGGGAAAATGTGGAACACAGTCTTTTGTACatcacagagaaaaacactaTGGTTCTGCACAGGGTTTGGCTGTTGCCATGATTGTAGTTGGAGTCACATTTACATGTCTGATGAGCGTCTGAACAGAACACAGCTGCAGGCCCACCTCActtcagtcaggattggaaaaaGTAAGGAGGTTAAGGGTAAGCAGGCTACTTAAGGATTTTGATTCAACAACGCCACCTGTAGGTCATTTAGTTTTGTATTAGTTTTGTGATGAAATACTTTTTATGGTATAAAGACCTATAAAGTGGGGCTGGGcgatattgcaaaaaaaaaaaaacactcaaacttCTTTACAAATatccaagattttttttttttattcacgattatttttaaatttaggaaaattgcattaaaacagtaatttgattaatcaaattaattcaattaaccTCACAGGCCTACTATAAAGGACACATCATGGTCCAAAACTAAATTTCATTTCAATGAGACgcttaatccctgtttgggGAAATTAACCCTTAGAGCCTGTTTATACCTGGTCACTTAATCTGGTTTGTATCCTTAGAAGGTTTTCAACACATTCATCTATACTTGGTATCAAATGTGTCTTTGGTTGAAATAAACTATGGTAATTTAGAAGTTTTCTCTCTGA

Function

NR:

description
PREDICTED: TFIIA-alpha and beta-like factor, partial

GO: NA

KEGG:

id description
K03122 TFIIA1, GTF2A1, TOA1; transcription initiation factor TFIIA large subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022681855.1 False 1953 mRNA 0.48 10 11403012 11411644
XM_022681856.1 False 1965 mRNA 0.46 9 11403559 11411642
XR_002651529.1 True 2313 misc_RNA 0.45 10 11402707 11411642

Neighbor

gene id symbol gene type direction distance location
mogs mogs,LOC106609973,LOC106602766 coding downstream 895312 10498845 ~ 10507395 (-)
LOC103029885 LOC108434384,LOC108435548,LOC107702154 coding downstream 923533 10474402 ~ 10479174 (-)
fbxo41 fbxo41,LOC108260496,LOC107689471 coding downstream 973299 10332167 ~ 10429408 (-)
smox smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173 coding downstream 1182846 10197406 ~ 10219861 (-)
LOC111195209 NA coding downstream 1237813 10162402 ~ 10164894 (-)
ston1 ston1 coding upstream 966 11412610 ~ 11426503 (-)
rps27a rps27a coding upstream 17605 11429249 ~ 11431897 (-)
ccdc88a ccdc88a coding upstream 99536 11511180 ~ 11574143 (-)
ppp4r3b ppp4r3b,smek2 coding upstream 171194 11582838 ~ 11594672 (-)
pnpt1 pnpt1,LOC106607983 coding upstream 185634 11597278 ~ 11611851 (-)
G183884 NA non-coding downstream 55544 11346910 ~ 11347163 (-)
G183857 NA non-coding downstream 215165 10955599 ~ 11187542 (-)
LOC111195215 NA non-coding downstream 225523 11157282 ~ 11177184 (-)
G183854 NA non-coding downstream 558108 10844201 ~ 10844599 (-)
G183840 NA non-coding downstream 743373 10658997 ~ 10659334 (-)
G183960 NA non-coding upstream 56213 11467857 ~ 11468253 (-)
G183963 NA non-coding upstream 64992 11476636 ~ 11479389 (-)
LOC111195221 NA non-coding upstream 1116930 12528574 ~ 12633591 (-)
G184094 NA non-coding upstream 1270851 12682495 ~ 12682697 (-)
G184150 NA non-coding upstream 1381138 12792782 ~ 12794964 (-)
G183880 NA other downstream 95886 11306289 ~ 11306821 (-)
G183585 NA other downstream 1550326 9845822 ~ 9852381 (-)
G183559 NA other downstream 1745093 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 3900278 7490075 ~ 7502429 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other downstream 4099515 7165393 ~ 7303192 (-)
G184051 NA other upstream 783568 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 1814689 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 2139488 13551132 ~ 13594753 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 2577165 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 2652000 14063644 ~ 14116456 (-)

Expression


Co-expression Network