ugdh (ugdh,LOC107757604)


Basic Information

Item Value
gene id ugdh
gene name ugdh,LOC107757604
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15645138 ~ 15659566 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682013.1
aagagagtgtgttaaagtgtgtgtgtgagagtgtgtgagagttgaCGGCATCATAATAGTTTTATTCATCCAGGCGGAGGAGAGCTGAGAGCTCCAGCAGCCCGAGCTTCAGTCTGAATCAGAAGAGGAGGACACTCAGCACCACTGAGCAGCTTTAATCTACAAATAAAGATGGTCCAGATTAAAAGAATCTGCTGTATAGGCGCTGGGTATGTCGGTGGGCCAACCTGCAGTGTGATTGCCAGCATGTGTCCTGAGGTCACGGTGACGGTAGTGGACGTGAACGAGAGCCGAATCAAAGCCTGGAACTCTGATACTCTACCAATTTATGAGCCGGGTCTGAATGAGGTGGTTTTGTCCTGCCGGGGCAAGAACCTCTTTTTCTCCACCGACATCGACTCCGCCATTAAAGAAGCAGACCTGGTCTTCATCTCTGTGAACACGCCCACGAAGACGTATGGGATGGGAAAGGGCCGAGCTGCTGATCTGAAGTTTATCGAGGCGTGTGCCCGCCGGATCGTGGAGGTATCAGACGGGTATAAGATTGTGACTGAGAAGAGCACCGTGCCAGTACGAGCTGCTGAGAGCATCCGCAGGATCTTTGATGCCAACACCAAACCCAGCCTTAACCTGCAGGTGCTCTCAAACCCTGAGTTCCTGGCAGAGGGGACGGCGGTGAAGGACCTGAAGGAGCCGGACCGTGTTCTGATTGGTGGAGATGAGACACCGGAGGGCCAGAAGGCTATCCAGGCTCTGTGTGAGGTTTATGAGCACTGGGTGCCCAAATCACGCATCATCACCACCAACACCTGGTCCTCTGAGCTCTCCAAACTGGCTGCGAATGCATTCCTTGCTCAGCGCATCAGCAGTATAAACTCCATCTCTGCTCTTTGTGAGTCCACCGGGGCGGATGTGGAGGAGGTGGCCCGAGCGATCGGCATGGACCAGCGCATCGGCAGCAAATTCCTTAAAGCCAGTGTCGGTTTTGGAGGGAGCTGTTTCCAGAAGGACGTGCTGAATTTGGTGTACCTTTGTGAGGCACTGAATCTGCCAGAAGTGGCCTCCTACTGGCAACAGGTGATTGACATGAATGAATACCAGAGGAGAAGATTTGCCTGTAGGATCATTGACTGCCTCTTCAACACTGTGACGGGGAAGAAAATTGCGCTGCTAGGATTCTCTTTCAAAAAAGACACTGGAGATACCAGAGAGTCATCCAGTATCTACATATCTAAATATCTGATGGATGAGGGAGCCAAGCTGCACATCTACGACCCCAAAGTCCTGAAGGAGCAGATCATGCAGGACCTTTCCCAGCCCAGCATCTCTGGAGACAACTCCCACAGAGTGCCGGAGCTGGTGACTGTGACGACAGACCCGTATGAAGCGTGTAAGAGTGCACATGCACTGGTTATCTGCACTGAGTGGGACATGTTtaagGATCTGGATTATGAGAAGATCTATCATCAGATGCTGAAGCCAGCATTCATTTTCGATGGCCGGCGCGTTTTGGATCATCTTCACCCCCATCTACAGAACCTTGGTTTTCAGATCGAGACTATTGGTAAGAAAGTGATGACCAGGCTCCCCTTCACACCGTCTGGTGGAGTACCCAGGATCACCCTTAATGAACCACCCAACAAGAAACCCAAAGCATGAGGGGATTACATGCCCATAATCCCACCTGTACAACCACCCACaattcccacacacacaaaaacccatccacacatacatttatttactttacattGGCTGAATATCTAACCAAAGAGCCAAAGCCCCCAAATATCCACAGTTTCAGCAATCAGCCcacatttttgtgtttagttaatttagtaatttagtattCAGTTACATAGTATTCAGATTTCCTATCTTCATCTTCAGATCTTCACATTCTCTCCTGAAGCCTTTATTATAAATGCCAAATTTATTTCAGCTGAGCCATCATTTACTAAACCTCTGATTTCTCATGTCGTCAGTATTAAACGGCCTGTTTCCTCACACTTCTCAACAAAAATAATTCTGATATAGAATGTGAACAGTAAAGGGGCGGATTCTCAGacatggattaagcctagtcctggactgttttcctttcaatggaaaatcatCATTCTAAATGCTGTGCAGTCTGAGACTAGGCCTGTATCATCTGTCCCATAGAGATTACATGAAGAAATAAATGATGGCTGTTTAGGTGcacaaacctaaaaaaaaaaaatcttgtacaGCCTtttctatataaatacatttcatttcTTAATGATGTTAAACCATAAATGACATTAACATTACACACTGTTGCACTGATTAAAAGGTTCCGTCGTGCATTTATAGTGCACTCTTACCCACCTCAGATCTGTATTTTTGCAccgtgttcttttcttttcttcatctTTCGTATGGACCACATGCTGTATTAATAATGCCCGTCTTTATCAGAGGGGTTTTTGTAATTGTAAAGAGCTGGAACATTATATTGAGTGGAAGCCTggactaaaaaataataattgcctTTTAAAGAAATGGCTAGATCAAATATGTTAtgttgttaaaataaatgaaaataaatgattaaaaatagccTAGAATAATGAAATTAGctctttttacagattttagctacattagcatgtTTGATTTACGCTATTTCTTTAAGTCAGTGTCCCAGTGCTGAATATAATTCAGGTATTTAACATTGTTAGCGATGTTCAGACTGCACTTAAACAGGATTTGCAGGATTTATTTTCTCAGATCAGATCGGGTGAGATGACATCACATGTCATAatgtatctgtatgggttgctgggGTGTTGACACTGTTCTTGGACCCCTGCAATTCAGGATATCCTGGATTTGATGGATGGATGTCATTGTTTGTCATATTAAGTAACAAAAGACgttgaaatataaaaattcaaTTTGCACGACCAGAATAAGATAcatctgtacaaatctgatCTATAACTGCATTTTGAAGCACCTCCAAATGTGGTTGGGGATTGATTTGCAAAATTGTTATTTCAAGGGGTTTCTGTTCCCACTATCAAAAATCAGAAATCAGTCTAAATCGAATCTAGATATAATAATCAGATTTGGACCGGCAGTCTAAACATATAGCCTTAGATATGCCAGACTGTTGAACATATACTTTATGTTTATAGATGAATGCAATTGTCCAATTATTTCAAATGAAATTCTGCTTCTGTGGCATTAATTAAAGCTTTCTGaatcatcatataaatataaatgtataatcaaATGAACTGAGCAAGCACTGAAAGATCTTAATGAGTGTTTTTTCAAACACAGACTGAGCAAAAacgatgattatgaagctttaGAAGACAGCAGTCAGTCGGTTGTTGCACACTGTtgtaaaatgtctgtaaaagcaGTACATGCTAGTTAAATGTGaatgttttttcattaaatcTCATGTATAGATTTGCAACACTAATGTAAAACAACGGAAATCAGTTTCTTAAATAAATATGGaccaaatgaagaaaaaaaa
>XM_022682014.1
CAAAAACTATGGTTTGAATAAACTGAACCTGGATGTTTGCGCACTGTTACACTTGTACTGTATTATCTTTACTTCACCATTCCACTGTTGAGACTTTTGCTCCAGCCCATCTTGCAGTGTCCTGGGACCGATCGAGAATGTGGATCCTCTGTAGCTTCCTCAGGACTGGTCGGTTTGAGAACGACTGGATTACACCACAGTTGTTCATTCAGGCCCACTGGGTCATCAGAGGCTGAGGCAGTAATATAATGACTCCTCCCTGTGAGTCCACCAGTTCACATTTTTTCTCTCCAGTTTCGTCTGGCTAATTAGAAGCTGCTCACAGTTGGGAAGCATCTGGTTTAAATCAGTGCTGAACATTGTGGGAGTGTGCTTTTCAGGGTTTTACGTCACTGGAACAGCATTATCAACAGCGGTAAGTCATCTGGTCAAGAATGTGGGCCTAGTCATTCTCATTCTCTGACGTATGGTGAGCAagagtgtaatattttatttctgatagAGCATCACTGACCAGTTagtcaataataatataatttatttgcaattaTAACCTAGTTTTCCCAATTTTGGAAGGCCAGTTACCCCAccgtgtctgtttgtctgtctgtgtctgtctgccctgcgatggactggcggcctgtccagggtgtatcctgccttccgcccgatgctggctgggataggctccagcacccccccgcgACCATTAATGGATAAAGtggttgataatgacttgacttgacaatTACCCCACCCCCTCATTAGGACTTCAAAGGCTTAGACTGTTTCAACTGATATTATATGAATGAGTTGCAGTTTTATCAACCTCAGATAATAAGATGGTCCAGATTAAAAGAATCTGCTGTATAGGCGCTGGGTATGTCGGTGGGCCAACCTGCAGTGTGATTGCCAGCATGTGTCCTGAGGTCACGGTGACGGTAGTGGACGTGAACGAGAGCCGAATCAAAGCCTGGAACTCTGATACTCTACCAATTTATGAGCCGGGTCTGAATGAGGTGGTTTTGTCCTGCCGGGGCAAGAACCTCTTTTTCTCCACCGACATCGACTCCGCCATTAAAGAAGCAGACCTGGTCTTCATCTCTGTGAACACGCCCACGAAGACGTATGGGATGGGAAAGGGCCGAGCTGCTGATCTGAAGTTTATCGAGGCGTGTGCCCGCCGGATCGTGGAGGTATCAGACGGGTATAAGATTGTGACTGAGAAGAGCACCGTGCCAGTACGAGCTGCTGAGAGCATCCGCAGGATCTTTGATGCCAACACCAAACCCAGCCTTAACCTGCAGGTGCTCTCAAACCCTGAGTTCCTGGCAGAGGGGACGGCGGTGAAGGACCTGAAGGAGCCGGACCGTGTTCTGATTGGTGGAGATGAGACACCGGAGGGCCAGAAGGCTATCCAGGCTCTGTGTGAGGTTTATGAGCACTGGGTGCCCAAATCACGCATCATCACCACCAACACCTGGTCCTCTGAGCTCTCCAAACTGGCTGCGAATGCATTCCTTGCTCAGCGCATCAGCAGTATAAACTCCATCTCTGCTCTTTGTGAGTCCACCGGGGCGGATGTGGAGGAGGTGGCCCGAGCGATCGGCATGGACCAGCGCATCGGCAGCAAATTCCTTAAAGCCAGTGTCGGTTTTGGAGGGAGCTGTTTCCAGAAGGACGTGCTGAATTTGGTGTACCTTTGTGAGGCACTGAATCTGCCAGAAGTGGCCTCCTACTGGCAACAGGTGATTGACATGAATGAATACCAGAGGAGAAGATTTGCCTGTAGGATCATTGACTGCCTCTTCAACACTGTGACGGGGAAGAAAATTGCGCTGCTAGGATTCTCTTTCAAAAAAGACACTGGAGATACCAGAGAGTCATCCAGTATCTACATATCTAAATATCTGATGGATGAGGGAGCCAAGCTGCACATCTACGACCCCAAAGTCCTGAAGGAGCAGATCATGCAGGACCTTTCCCAGCCCAGCATCTCTGGAGACAACTCCCACAGAGTGCCGGAGCTGGTGACTGTGACGACAGACCCGTATGAAGCGTGTAAGAGTGCACATGCACTGGTTATCTGCACTGAGTGGGACATGTTtaagGATCTGGATTATGAGAAGATCTATCATCAGATGCTGAAGCCAGCATTCATTTTCGATGGCCGGCGCGTTTTGGATCATCTTCACCCCCATCTACAGAACCTTGGTTTTCAGATCGAGACTATTGGTAAGAAAGTGATGACCAGGCTCCCCTTCACACCGTCTGGTGGAGTACCCAGGATCACCCTTAATGAACCACCCAACAAGAAACCCAAAGCATGAGGGGATTACATGCCCATAATCCCACCTGTACAACCACCCACaattcccacacacacaaaaacccatccacacatacatttatttactttacattGGCTGAATATCTAACCAAAGAGCCAAAGCCCCCAAATATCCACAGTTTCAGCAATCAGCCcacatttttgtgtttagttaatttagtaatttagtattCAGTTACATAGTATTCAGATTTCCTATCTTCATCTTCAGATCTTCACATTCTCTCCTGAAGCCTTTATTATAAATGCCAAATTTATTTCAGCTGAGCCATCATTTACTAAACCTCTGATTTCTCATGTCGTCAGTATTAAACGGCCTGTTTCCTCACACTTCTCAACAAAAATAATTCTGATATAGAATGTGAACAGTAAAGGGGCGGATTCTCAGacatggattaagcctagtcctggactgttttcctttcaatggaaaatcatCATTCTAAATGCTGTGCAGTCTGAGACTAGGCCTGTATCATCTGTCCCATAGAGATTACATGAAGAAATAAATGATGGCTGTTTAGGTGcacaaacctaaaaaaaaaaaatcttgtacaGCCTtttctatataaatacatttcatttcTTAATGATGTTAAACCATAAATGACATTAACATTACACACTGTTGCACTGATTAAAAGGTTCCGTCGTGCATTTATAGTGCACTCTTACCCACCTCAGATCTGTATTTTTGCAccgtgttcttttcttttcttcatctTTCGTATGGACCACATGCTGTATTAATAATGCCCGTCTTTATCAGAGGGGTTTTTGTAATTGTAAAGAGCTGGAACATTATATTGAGTGGAAGCCTggactaaaaaataataattgcctTTTAAAGAAATGGCTAGATCAAATATGTTAtgttgttaaaataaatgaaaataaatgattaaaaatagccTAGAATAATGAAATTAGctctttttacagattttagctacattagcatgtTTGATTTACGCTATTTCTTTAAGTCAGTGTCCCAGTGCTGAATATAATTCAGGTATTTAACATTGTTAGCGATGTTCAGACTGCACTTAAACAGGATTTGCAGGATTTATTTTCTCAGATCAGATCGGGTGAGATGACATCACATGTCATAatgtatctgtatgggttgctgggGTGTTGACACTGTTCTTGGACCCCTGCAATTCAGGATATCCTGGATTTGATGGATGGATGTCATTGTTTGTCATATTAAGTAACAAAAGACgttgaaatataaaaattcaaTTTGCACGACCAGAATAAGATAcatctgtacaaatctgatCTATAACTGCATTTTGAAGCACCTCCAAATGTGGTTGGGGATTGATTTGCAAAATTGTTATTTCAAGGGGTTTCTGTTCCCACTATCAAAAATCAGAAATCAGTCTAAATCGAATCTAGATATAATAATCAGATTTGGACCGGCAGTCTAAACATATAGCCTTAGATATGCCAGACTGTTGAACATATACTTTATGTTTATAGATGAATGCAATTGTCCAATTATTTCAAATGAAATTCTGCTTCTGTGGCATTAATTAAAGCTTTCTGaatcatcatataaatataaatgtataatcaaATGAACTGAGCAAGCACTGAAAGATCTTAATGAGTGTTTTTTCAAACACAGACTGAGCAAAAacgatgattatgaagctttaGAAGACAGCAGTCAGTCGGTTGTTGCACACTGTtgtaaaatgtctgtaaaagcaGTACATGCTAGTTAAATGTGaatgttttttcattaaatcTCATGTATAGATTTGCAACACTAATGTAAAACAACGGAAATCAGTTTCTTAAATAAATATGGaccaaatgaagaaaaaaaa

Function

symbol description
ugdh Predicted to enable NAD binding activity and UDP-glucose 6-dehydrogenase activity. Acts upstream of or within atrioventricular valve formation; determination of left/right symmetry; and positive regulation of signal transduction. Predicted to be active in cytosol and nucleus. Is expressed in several structures, including axis; head; heart tube; mesoderm; and vestibuloauditory system. Human ortholog(s) of this gene implicated in developmental and epileptic encephalopathy 84. Orthologous to human UGDH (UDP-glucose 6-dehydrogenase).

NR:

description
PREDICTED: UDP-glucose 6-dehydrogenase

GO:

id name namespace
GO:0003188 heart valve formation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0003979 UDP-glucose 6-dehydrogenase activity molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00012 UGDH, ugd; UDPglucose 6-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682013.1 False 3523 mRNA 0.42 12 15645138 15659566
XM_022682014.1 True 4194 mRNA 0.43 12 15645138 15658494

Neighbor

gene id symbol gene type direction distance location
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding downstream 8046 15632254 ~ 15637092 (-)
rfc1 rfc1,LOC102787736 coding downstream 15133 15616094 ~ 15630005 (-)
LOC103043828 LOC108437730 coding downstream 84306 15428393 ~ 15560832 (-)
LOC103041363 qdpr,dhpr,qdprb1,LOC108437732,LOC107750446,LOC107702409,LOC107562607 coding downstream 272701 15367109 ~ 15372437 (-)
LOC103041667 ldb2b,LOC108434309,LOC107562611,LOC107750444,LOC108260957,LOC107548319,LOC107671914,LOC107702407 coding downstream 292852 15332135 ~ 15352286 (-)
pds5a pds5a,LOC107757607 coding upstream 25250 15684816 ~ 15707540 (-)
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding upstream 103620 15763186 ~ 15767780 (-)
dctpp1 dctpp1 coding upstream 435464 16095030 ~ 16096320 (-)
fam160a1 fam160a1 coding upstream 460108 16119674 ~ 16141270 (-)
rps3a rps3a,LOC107695588 coding upstream 520504 16180070 ~ 16184812 (-)
G184836 NA non-coding downstream 80255 15564622 ~ 15564883 (-)
LOC111195235 NA non-coding downstream 225931 15412667 ~ 15419207 (-)
G184816 gtf2e2,LOC107671915,LOC107548363 non-coding downstream 258037 15384714 ~ 15387101 (-)
G184818 NA non-coding downstream 265932 15372772 ~ 15379206 (-)
LOC103043324 NA non-coding downstream 592268 15047747 ~ 15052870 (-)
G184853 NA non-coding upstream 1101 15660667 ~ 15664885 (-)
G184854 NA non-coding upstream 5612 15665178 ~ 15665714 (-)
G184863 NA non-coding upstream 61741 15721307 ~ 15722297 (-)
G184865 NA non-coding upstream 66798 15726364 ~ 15726622 (-)
G184868 NA non-coding upstream 72815 15732381 ~ 15732755 (-)
smim18 smim18 other downstream 263930 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 304558 15309509 ~ 15340580 (-)
LOC103032041 NA other downstream 1528682 14063644 ~ 14116456 (-)
smim14 smim14 other upstream 6545 15666111 ~ 15671954 (-)
lrat lrat other upstream 1238612 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1570519 17230085 ~ 17241027 (-)
G185295 NA other upstream 1592701 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1635935 17295501 ~ 17300782 (-)

Expression


Co-expression Network