LOC103031415 (LOC108442772,LOC107570622,LOC106951372,LOC102787328,LOC103153163,LOC103472754)


Basic Information

Item Value
gene id LOC103031415
gene name LOC108442772,LOC107570622,LOC106951372,LOC102787328,LOC103153163,LOC103472754
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 17895563 ~ 17937588 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682054.1
AAGTTAGTTGGTCTGAGCGGTTCTGAGGCGCGGAGTCGCGGCGGAATCCCGGAGTTCTGCGGACTAACCGGGTCAGTCCGgctgtttatctgtttactGACCCGCTGAGAGGATTAAACCCGGGAATTCTGAGTTTACGGACCACAGGAAGCAGCAAATCACCGCAATGTAGAGAGTCCACACAGTCCAGCTCAGCCATGggTTCGGAGGCGGTGGAGGACTGTGTGCAGGGGGCGCTGTCCTCCCTCTACCCCCCGTTTGAGAGCACTGctccccctctcctctcccagGTCTTCTCAGTCCTGGAGTCCACCTACCAGCACGACAGTCTGCGCTATCTCCTGGATTTCTTCATCCCAGCCAAACATCTTCTGCACAGACTCCAGCAGCATGCCTGCTCCCAGTACCTGGGCTGTCTGTTCCTGCATTCTGGTTGGCCGCTGTGCCTGGAGGAGAAGGTGGTGGTCCAGCTCTCGACTCTCGACTGGAGACTTTTGCGCAGTACTGACTTCTACCTGCAAGTGGTGCCGTTTTCCACCCGTTGTCCCCGCCTGGCCCTGAAGTGCCTGGCCCCGGGGGGCCGCAACGTCCAGGAGGTCCTGGTGCCTGAGTCCCAGCATCCCCTGGTTTTCACGGCTGAGTGGCTGCACTGCATCAACAAGGAGCGGGGCTGCAACAGGGAAGGAGGTGGCTGTTTAGACACCTGTCTAGTCAGCACTTGTGACGGCGTGGTGCGAATCCCCTGGGACGAGGTGGTGTACCCGAAATTGCTCCACAACCCGACGGACCCTCTTTCCAGCCTGGAGCATCCCTCCAAAGACCCTGCAGCCCCTAAATGCCTCTCCCCGACCACAGGGGGTCTGGGAGTGGGGTGGGGCTCTTCCTCGGGAGAGGCCGACTCTTGGTCTTGGGACGAAGAGGACGACTTGCCTCCGGATGGGGACGAAGCCGAGATCGAGTCTGCTTTGGGACGCCTGAGGCAGGATCATCTGGTTGCAGATGGTTCTGGGGATTATGTGGAGCTTCTGGAGCCTCGAGGAGGTCCTGACGGTGGCGCCGATCCCAAGCAGCGATACTTGGAGATGCATGGAATCTGCAAGACTAAGACGCTGCCGCTGTGCAGGAGGAGCAAGGCAATCCGGTTGCGGAAGGGAAAGGCGTGGGGGTATGGCAGGGGCGATGCTGCGGGAAGGACTGGAAGCTTGGGAAGGAGGGACAGCaacaacagtggcaaggaaaatgGGGCAACTCGGAGGGATTCGATGAATTCGAGACCTCCACCTCGGGTTATCAATTTGGCTCGAGAAAGGAGGCCGTGCCCTCCTTGCCTACAGGACTCGCATGAGGGTGGTACTGATCCATTAGGTCTGGAAAGCAGGGGACTTTATTTGAAGGGTCCTGTCAAGGAGAGAAGGCCTGGTGTGGGgaaggaaagagagggagtTGGTAGCACTTTGCCTTGGGAAGAAAGTGCCAAAGGAAGGGTCTCAATAGGCCATAGCTCTAGAGTTGAGGATTGCAATGAAGTAGACTTACCTGTAGCAGGTAATCCAGGGGTGGACCATCCAGTTGAAGATCACGGTCTGCACTTAGACTCTGTTTTTAAGAGCGATAAGTCTTCGACTGGCACTTTAGACAGTAGAGTTAAATGTTCAGGAGAATTAGCCAATGCTTCCAAAGATGCCAACACTTCAGATTCTAGAAAAACGTTGGCGGAAACTGTCAACGGATCTGAAACAAAGCTAAAGCCACTTGCAGACTCCTCTCGTAACCAGGAATCACACTCCAAGTACAATATTCAGAGCCTAACCAAAGATTCATCTAACTCCAAAAATCAAACGGGACGTTGTAACGAACTCAAGAAGCAGAATCAAGGTAGAAATCCCTCTCAACCAGGTACCGACAGTGCTGCCAGTGAAAAGCATGCTGGGAAGACGGAGGAACGCGTGTGTCCCAGAGGAAGGGAAGTTAAAGCAGCTGGATTTCGAGCCCCCAGaCGGAAGAGGAAGGGTAAAGGAAAAGGAAAGGGCAAATCCGGTGCTCGTACCAACCAAAAAAACAAGGGAGAACCTCAAAGTCTCTCAAAGACCCAAAACAAGGCCTGCCCAGCCTCCACCACCTCAGATTCACTGGCTAACCCTTCCCACTCTGAGGACGCCCAACCAGAGGAGcccaaaaaacaggaaaaagagCCTGTTTTAACCAATGGCAACGCAGCAGAGCCTGAATCTGCTGGCACAAGTCCAGCTGAAAAACTGGAAGTTCAATCTGAAAACACCAAAGATTCAAAAACCCAGTCGGGCACATCCTTACCCGACCACTCACCTGAAGGAGACGGGTCATCAGGACCTTCTGTCCAATCCAAAGCTCCCCTGTCTCCTGAAGCTCCTCCTCTGCTTAGGGATTTAGACGTTGAGCTCCTCCAATCAGGAACGTTCATAATGACAGgtaCTGTGGACAGACTTGGACGAGGTTTGGTTATTACAGAAGCTCACGTCCCTAAGGAGGGTCACCATGTCAGTGATGTAGTGCAGCTGTTGTCctgtttttacaccattacCAGACCTGCAGCCCGAGAGAAAGGCCTGACTGTACTGGTGGACAGCAGACAGGCTCCTCCCCCTGAACTCTGCCTCTCTGCACTAAAGTTactgaagtctCAGTTACCAGCAGCTCTTGGTTCTGTTCTAATTCTCACAAAAGAAGATCAGGAGTCGGCCCCGCCCACTCTGGATGGAATAGAGGTGCATTCAGTGAGAGGTACTGGGGTCctgcagcagtatgtggacaggCAGCAGCTGACCAAGGATCTGGATGGAGACTTTGAGCACTcgcatgctgattggctgacctTCAGGCTGAGCCTGGAGCAGCTGACCCAGCGCTGCCAGAGCGCCCTCTCTCTGCTGGAGGAGGCGCTGCAGTCCATGGAAACAGAGCCGCTGCCCGACTGCATTAAGTCTGTGCCGCTCAGTGTTGATAAACACAAGCAGCTGATGTCGGATGTTTTGGCCGATGAGCGTCTGACGGAGCTCCAAAGAAGGGGCGGGGCTTGGCTGGCTGGACTGGCTAACGGAACCTCAGGATTGGCTCAGAAGTCGCCAGACTGCAGGGCCGCTTTATCCGCGACCTCTAGCCTGTACGACAGCGTGGACGACGCGCTCCATCGGCTGGTGAGGGTCTCCAACCAGAGGGGTCACGACCTGGAGGCACTGGGGAGACTGGCAGCTTTAGTGAACAGACTGGACAAGTGTGAGGTGGAGATAGAGCGAGTGCAGGAGCAGCTGGAGGACTATAAGGATCCGCCCCTTTCTCTCAGCCGCCTGTCACTCAAACAGCAGAAGTTCAGAAGCTTCCGAGAGTCGGCCATGgagctTCACAGTGAGACTCTAGTGGTACTGGGAGAGGTTGAGAGTTGGTCTGAACTTGATTGGCCAGGGCTGGGGGCGGTCCTTAGACGACTCCCACCAATCAGAGAGAAGGTCAGAGACATGTCTCACTGTCTGTCCGACTGCTGGACACAACTGGACAACACACAGAGACTGCTGTCCACTCTAACTGAGGCGTCCCAGTGGTGCGATGtggtctcctcctcctcccccctcTCTTCCCCCTCCTCCCCGCTCTCCTCGCTCCCCCCCATCCCGCCGTCCCGGTTCCAGGACGCCCGGGCCCTGGCTCTTGAGCtggggggcggggctctgctgGAGCTCTGGGCGCAGACTCTGGACCGGTACCAACGGACGCTGGCCCACTTTAAGACCCGGGTTCTGCAGGCCGAGCGCGGTTCACCCACAGCCGCCCAGGGCCAGGAGCCCGGATCAGGCCCGCTCCGGACCCCGCGGACCCCTGGGCCTGGTACCACCAGCATGTGGGAGCTGGAGGGGGAGGTGGAGGCGGAGTGGAGCGGTGGGGAGGGTGGGCTGCAGTCCTGGGGGTCTCTGGCCTCGGTTTTCCGCCCTCAGAACTGCTCCACGCTGAAGATcggagaggagaagaagaaggaggggTCCGGGGGGACGGCGGGAGGCGGGAAGTTCCTGCAGAACCTTCTCAACCCAAACAAGAAGAGCCCCACAGAAGCTCCTCTGCACCCCAAACCTCCGCGGAAACGCCACCCGAGCTTCGACCTACAGGCCCTGCTGGCACCGCGGCGAGCGACCGCCACCGTGACCCGCCCCGCGGAGGCGCCGCTGAGCGCCGGGAGCCGGGCCTCGCCCCTGTCCTGGCTGGGCAGGAAGGCTGTAGCTGACCCCATCCTCACCGCGGGGATCTCAGCCGCCGTGCCGGGGTGGAGGGAcaccggaggaggaggaggtgcagGAGGAGGTGTTGGAGGTGGTGTTGGTGGAGGGGTGCTGATTCGGGGAGTGGAGGTCAGCAGTAGGGAGATCGCTGATCATACCGGACTGACCCGGCAGCACGTCCTGCTCGGCCggacggagagagagatgggtggAGAGAGGCCTGGAACCACGGCTCAGAGTAAGCTGTACCTGCAGTGGTGCCGGCTGGTGAGCTCTGAGAGGCAGTACGTGGCTCTACTGAAGGCTGTAGAAGAGAATTACCTCCCCCTGCTGGACAGCGCGGATGCCCCGCCCCCTCTGAGAGGGAAGGCTGACCAGCTCTTCTCCAATTGGCGCAGCCTTGCAGCCTTCCACTCGCAATTACTCCTCCCCGCCATGGAGGGTGCTCTTTCCCAGACACTGCAGCAAACTGACTGCTTCAGTAAATGCAGGGATCAGTTCGTGCAGTACTCGCACTACATCCGCATGAAGCCTGATCCGGACTCTTTACTCGTCAGCCAGGCTGTTGACTTCTTCAAGgtgAAGCTGTCcggttctccctctctctcctccgtcTCGTTTCCTCAGTGTCTGTTGGCTCCGACTCAGAGGCTGCAGCACTACTGCGAGATCCTGGAGGAACTGGGAGGTCTAAACCCCGCCCCTGACTCCGCCCTCTCCATTCTGAGACACGCCCAGCGGCACGGAGAGGACCTGCGGGCGAGCGACCTGATCACGGGCTGtccggtccCCGTAGCAGAACGTGGTGAGCTGGTACGGCAgggtgagctgtgtgtgtgtgcgggggggaggaggaagaagacAGGAATGAGGAGTGTGTTCCTTTACCAGCATTACATCATCTTCACCAAACACAAGACCCCCAGCCCCGGACGCAGCGTCTACAGCTTCAAACACTGCCTAAAGACGGGAGAGATGGGTCTGACTCAGAGTGTTGGAGAGGAGGGTCTGAGGTTCGAGGTCTGGGTGAGACAGAACTCCAGAACCAAGGACTGTCTCACCCTGCAGACGTCCAGCCCTGAGGAGAGAGAGGTCTGGACCCACGACATCGCCCAGCTCCTGTGGACTCACGCCATCCATAACACAGaacTGTGTCTGAAGGAATCTCTGTGTATGGGAGTGTCCAGTAAGCTGCTGCTGGATGTAACCGGAACTCCGACAGCTGAGCTGGACTCCAGTTTCAGTCTTAATGACAGAGttcaGAGTAGCTGTTCAGACTCCTCTTCAGTGGGGAGTCAGAAGGAAGGAGGTTCTCCAGCTGTTGCTCGAGACCCAAAGAGGGACTCAACCCAAAGTGTCCACACTCAGAATTCATCGCCGTCCACCACCGTGTGATAATCATCTCGAGATTAAAGaattaaaatggACATTCACTGGATATCGGGACAACTGGACTCTGGGACAACAtgctgaagtaaaaataaaat

Function

NR:

description
PREDICTED: rho guanine nucleotide exchange factor 40-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682054.1 True 5734 mRNA 0.57 27 17895563 17937588

Neighbor

gene id symbol gene type direction distance location
LOC103024551 LOC108442773 coding downstream 19180 17854554 ~ 17876383 (-)
LOC103024247 NA coding downstream 47635 17843428 ~ 17847928 (-)
LOC103031730 LOC108442776 coding downstream 112923 17775259 ~ 17782640 (-)
LOC103045226 NA coding downstream 123346 17768380 ~ 17772217 (-)
LOC103024973 LOC108434356,LOC108260969,LOC107746005 coding downstream 157822 17708851 ~ 17737741 (-)
LOC111195249 NA coding upstream 38525 17976113 ~ 17977956 (-)
LOC103023299 NA coding upstream 48681 17986269 ~ 17990384 (-)
polr1e NA coding upstream 128101 18065689 ~ 18071638 (-)
map3k4 map3k4,LOC107739870,LOC107705416 coding upstream 260862 18198450 ~ 18231271 (-)
LOC103028955 LOC108415761 coding upstream 410679 18348267 ~ 18357795 (-)
G185393 NA non-coding downstream 3298 17889373 ~ 17892265 (-)
G185389 NA non-coding downstream 14476 17807087 ~ 17881087 (-)
G185378 NA non-coding downstream 70532 17783867 ~ 17825031 (-)
G185380 NA non-coding downstream 121381 17773654 ~ 17774182 (-)
G185386 NA non-coding downstream 131192 17762950 ~ 17764371 (-)
G185428 LOC103022477,LOC108434314,LOC108260671 non-coding upstream 58511 17996099 ~ 17997259 (-)
G185402 smc2,LOC107746033,LOC107702366,LOC107656012,LOC107551560 non-coding upstream 70153 18007741 ~ 18009805 (-)
LOC103047599 NA non-coding upstream 177453 18115041 ~ 18125528 (-)
G185445 NA non-coding upstream 194921 18132509 ~ 18141223 (-)
G185444 NA non-coding upstream 198217 18135805 ~ 18148838 (-)
G185321 NA other downstream 563609 17330018 ~ 17331954 (-)
nutm1 NA other downstream 566674 17313370 ~ 17328889 (-)
G185311 emc4 other downstream 594781 17295501 ~ 17300782 (-)
G185295 NA other downstream 640930 17252267 ~ 17254633 (-)
LOC103032582 NA other downstream 654536 17230085 ~ 17241027 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other upstream 81134 18018722 ~ 18050369 (-)
apela NA other upstream 85534 18023122 ~ 18097691 (-)
G185890 LOC108443824 other upstream 2010494 19948082 ~ 19951796 (-)
LOC111195252 LOC108260666,LOC108412153 other upstream 2179838 20117426 ~ 20127092 (-)
G185943 NA other upstream 2633601 20571189 ~ 20627262 (-)

Expression


Co-expression Network