LOC103030999 (vit)


Basic Information

Item Value
gene id LOC103030999
gene name vit
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 20357861 ~ 20399812 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682095.1
tctctctcgggctAATGAACACTGCAGTGCAGCTTCAGTCTCAGTGCTGAACATGAGCTCAGCTCCTCTGGATCTCCAGTCATGCCTACAGGAGCTGTTTACCTGTGAGGAGCTTTAACTGACACACCTGGACTCCCCTCACCTGAGACGGTGTTCACAGGGCCACAAGATCAACTGGAGAACACATTCCATCTGCTCATCTCCAGTTTTCAAGATGTTCAGAGCATCTACTATCAGCGTCTGTGTTGTGTTGTTACTGATCTGTAGAGGTGATGCTAAGCCCAATGGAAAGAGCAAGAAGGCCAAACAAGTTGTTCCGGATATCGAGTGTGATATTCGGGCGGGGAAGATCAGCTACCCCGAGTTTATCGTAAGATGTCCTGCTGGCTGCCGCGAGACCATGCAGAGGGTTTACGGCACGGGAATCTACGCCTCCATATCCAGCATCTGCAACGCTGCCATCCACAGTGGGGTGATCACTAACACAGGGGGGAAGGTGATAGTGAAGAAGATGGCCGGACAGGCCGAGTATAAGGGCAGTCACGCTTACGGCGTCAGGTCACTGTCCCTCCCCAACTGGAGAGAGTCCTTTACTGTGGAAGTGGGAAAACCCAACAAAGGCGTGATCTACCCAACTACCCTGGAATACACAGCTTCAAAACCCACCACAGTAAAAACAGGCCAAAAGGAAGCCAAAGCCTCACCAGTCTCCACAGTGCTGCCAACCACGACAACCCCCGAACCAACCACGACTACCACCCCAGAGCCAACCACCACCACgaccacaacaaccaccacaacaaccaccacgACTCCACCTCCCACAACCACGACCACCACGCccccaaccaccaccaccaccaccaccaagcaGAGGGCTGCCGTCCATAAAGTCAGAGATGCAGGCAGCAGTCACCCGTACTATGCCTCAGTGGCTGCAGCAGCCAATGCAAGACAGTCCCAGACCAGCCAGGGGAAGGGTCTTCCTCAAGCATTCAGGGGCGGTCCCGCCATCGCCGGCAGATTTTCACCTCGCATCAATCCAGGGGTTCGCAGACCAGATGCAGGAACTCCAATCAGACGCCAGCCTTCATCTCCATCCACTTCAGCTTTCAATCGAGTCAAGGTGCTCCAGCCCGAGAGGAACGAGAACTCCAATCCCACCTTTGGTAGGAGGGAATGGCCACAGCCTGCGCGACCCGATTGGTTCTCCGGACCCAGGAGAACATCAGatgTTACTAACTATGAGCCAGACTCAGGCTACACCTGGAGCGAGGTGAACACCGGCGACTCCGCAGCTCCAGAACCACGGCCAGACATTTCAGAGTACGAGCGCTGGTACTATAATTTTGGACAGTATCCTTCAGCTTCTCGACCAGCGGAGACGGAAAACGGCCGCAAGCTCCACCCTGAAACCAGCCACACACGAGTGGATCCGGTGGAGGTGTGGAAGCCGGAATCCAACCCGTTCGACTCAGGATTCAGCACCCGAGAGCAGGACTCCTTACCCAGAGCCCCAGAAATCATGTCTCAAGGAGATCCGAACTGTAAGGTGGACATCGCCTTCCTGATGGACGGCAGCTGGAGCATCGGGAAGCGGCGCTTTAAGATCCAGAAGGATTTCCTGGCAGAGGTTTCGCAGGTCATCAATGTGGGCGTGGCTGGACCGATGATGGGCATCATCCAATACGGAGACGACCCGGTGACGGAGTTCAGTCTGAGGCAGTACTCGAACTCCAAAGAGCTGAAACCCGCCATCGACAAGATCATGCAGAAAGGAGGACTTTCAAACGTGGGTAAAGCCCTCTCCTACATCAACAAGCACTACTTCAGTGATGCCAACGGTAACCGGGGAGGGGCTCCTAACGTGGCGGTGGTCCTGGTGGACGGTTGGCCCACGGATAAGGTGGAGGAAGCTTCCAGACAGGCAAGAGAGTCGGGCATCAACATCTTCTTCGTTACCATTGAGGGTCCTGACGACAACGAGAAGCACAATGTGGTGGAGCCCAACTTTGTGGATAAGGCCGTCTGCAGAACCAATGGGTTCTTCTCGCTGCCGGTGGCCAGCTGGTTCGCCCTCCGGAAGGCCGTGCAGCCGCTGGTGAAACGAGTGTGCGACACGGACCGCCTGGTCTGCAGCAAGACCTGCCTGAACGCCAACGACATCGCCTTCGTCATCGACGGCTCCAGCAGCGTGGGCACCGGAAACTTCCGCACGGTGCTGCAGTTCGTAGCCAACGTGACGCGTGAGTTCGAGATCTCGGACACGGACACGCGGGTGGGGGCGGTGCAGTACACGTACGAACAGCGCCTGGAGTTCGCCTTCGGGCAGCACAACACCAAGGCTGACCTGCTGAACGCCATCAAACGCATCAACTACTGGAGCGGCGGCACGAGCACTGGCGCCGCCATCACCTACGCCGCCGAGCAGCTCTTCAGCAAGTCCAAACCCAACAAACGCAAGATCATGATCGTCATTACGGACGGACGGTCCTACGACGACGTCCGCGCCCCTGCTCTGGCGGTGCATCGGTCAGGGGTCATCGCCTACTCCATCGGCATCGCCTGGGCGGCTCAGGACGAGCTGGAGTACATCGCCACCGACCCCGACCGAGACCACTCCTTCTTCGTGGACGAGTTCGACAACCTCTACAAATACGTGCCGAAGATCATCCACAACATCTGCCAGGAGTTCAACTCTCAGCCGCGGAACTGAGCCACGCTCAGTCGCTCTGGCGCCACCTACAGGACGTTCAGGCGCATCATAGCATCATAGCATTTAGCTTATTGAGTCTCTACGGCCTTTTGGAGTCTTGG

Function

symbol description
vit Acts upstream of or within visual perception. Predicted to be active in collagen-containing extracellular matrix.

NR:

description
PREDICTED: vitrin isoform X1

GO: NA

KEGG:

id description
K24506 VIT; vitrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682095.1 True 2817 mRNA 0.57 24 20357861 20399812

Neighbor

gene id symbol gene type direction distance location
ddx21 ddx21,LOC108414772,LOC100194728,LOC107693788 coding downstream 38549 20300976 ~ 20319312 (-)
LOC111195146 NA coding downstream 70539 20282842 ~ 20287322 (-)
LOC107197720 NA coding downstream 76289 20272228 ~ 20281572 (-)
LOC103041484 LOC108443830 coding downstream 88628 20244308 ~ 20269233 (-)
slc30a6 slc30a6,znt6 coding downstream 142910 20180913 ~ 20214951 (-)
LOC103040568 NA coding upstream 1822 20401634 ~ 20413021 (-)
LOC103040253 ick,LOC108261001 coding upstream 85894 20485706 ~ 20499567 (-)
LOC103030053 NA coding upstream 101122 20500934 ~ 20512281 (-)
LOC103039929 NA coding upstream 114758 20514570 ~ 20522866 (-)
LOC103039622 LOC105906630 coding upstream 132406 20532218 ~ 20548736 (-)
G185892 NA non-coding downstream 361608 19969909 ~ 19996253 (-)
G185687 NA non-coding downstream 443691 19913912 ~ 19914170 (-)
G185671 NA non-coding downstream 586314 19771323 ~ 19771547 (-)
G185654 NA non-coding downstream 789665 19566162 ~ 19568196 (-)
G185635 NA non-coding downstream 944875 19404985 ~ 19412986 (-)
G185967 NA non-coding upstream 254793 20654605 ~ 20656786 (-)
G185974 NA non-coding upstream 299840 20699652 ~ 20701062 (-)
G185985 NA non-coding upstream 338878 20738690 ~ 20739699 (-)
G185986 NA non-coding upstream 339070 20738882 ~ 20739874 (-)
G185989 LOC108437859 non-coding upstream 341837 20741649 ~ 20744673 (-)
LOC111195252 LOC108260666,LOC108412153 other downstream 230769 20117426 ~ 20127092 (-)
G185890 LOC108443824 other downstream 406065 19948082 ~ 19951796 (-)
apela NA other downstream 2260170 18023122 ~ 18097691 (-)
kiaa0368 kiaa0368,LOC107702367,LOC107551559,LOC107656759 other downstream 2307492 18018722 ~ 18050369 (-)
G185321 NA other downstream 3025907 17330018 ~ 17331954 (-)
G185943 NA other upstream 171377 20571189 ~ 20627262 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other upstream 240526 20640338 ~ 20678614 (-)
G185990 NA other upstream 348352 20748164 ~ 20752273 (-)
LOC103038058 slit1 other upstream 364316 20764128 ~ 20916624 (-)

Expression


Co-expression Network