arhgap19 (arhgap19)


Basic Information

Item Value
gene id arhgap19
gene name arhgap19
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 20932530 ~ 20940432 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682114.1
ATGTTTTTACGGAGCTTCTGCTGAGTAACGTGACCCGGCTGATGGACCTGCCCGGCGCCGAGTTCTCCCAGCTGCAGGGCGAGTCCGAACTCAAGCTTCCCCCCTCCACCGGCTTCCTGCGCCTCCCCAACTTCCTCAAACGCAAAGagaaAGGAGTGGTTTTTGGAGCACCTTTAACTGAGGAGGGCATCGCACAAATCTACCAGCTAATAGAGTACCTGGGTAAAAACCTGCATGTGGAGGGGCTGTTCCGAGTTCCCGGGAACAGCATCAGACAGCAGGCCCTGCGGGAGATGCTGAACGCCGGGGCCGATATAGACCTGGAGACGGGGGACTACCACCCCCACGACGTGGCCACGCTCCTCAAGACCTTCCTCGGGGAGCTGCCGGAGCCGCTGCTGACTCACCGCCATTACCACGCTCACCTCAAAATAGCcgagaTGACTCTGTTTGATGAAAAAGGCAATAAAACGTCTGTTCCTCATAAAGAGCGTCAGATTGAAGCCCTGCAGCTTCTCTTCATGCTGCTTCCTTCAGCCAATCGCAGCCTCCTGAAACTCCTGCTGGACCTTCTGTACCAAACCGCCAAGAAACAGGACAAAAACAAGATGTCCGCCCACAACCTGGCCATCATGTTCGCTCCCCACATCATATGGCCCAAAAATGTCACAGCCAGCGATCTGCAGGATAATCTGCATAAACTCAACAGCGGAATTTCATTTCTCATCAAACACTCGCAGAAATTATTTCGGGCGCCGTCGTACATCAAAGATCACGCACGGATGCTCTTCACCGGATCCAGAACTCCTCAGTCCAAGGACGATATGGAGCTGTGCTCCGGGACGGTCAGCAGGACACGCCTCCCCTCGAAGAGAAGCAGTGATGAGCACGACGGTGgaggacagcagcagcagcatcacacTCAGGATGCTCTCCGTGATCTCTTCAACCACGTCACCAACATGCCCGAATCCGCCAAGAAGAAGAAGCTCATTCGACAGttcaacAAGCAGGGAACTCCTGTTCGGGAAAACACCAGACCTCCTTCAAATACCAAACACGGGCGCTCTCGGTCTTTAGGAGGACTTATAAAGAAGAAAGTTTTGGGGAGTCAGCTCACAGTAACGGGAACGTCTCAAACCAAAGAGGCGACAAAAGGAAGCAGCGCCTCGTCTATCAAACGGACCCCCCTCTCTCCGGCCCAGCAGTCCAGTTTAAGCTTAccttaactatttatttaacctttaatcCATTTAGATCAGatagataataatataattggctaataatataatttacagtCCGATAACAAAGTCGAGCCAGTGTGATTTTAACCCGaaccattaaaatgtttaattttagtgAAGATTTCTACAGGATTTTAAGTTATAAAAATGTCTGTTGCACCCTGAACaaagcattaattaaaaaaaggtattaaaagaaaaaaaataaaatataaaaaggta

Function

symbol description
arhgap19 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of small GTPase mediated signal transduction. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human ARHGAP19 (Rho GTPase activating protein 19).

NR:

description
PREDICTED: rho GTPase-activating protein 19-like

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K20640 ARHGAP19; Rho GTPase-activating protein 19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682114.1 True 1469 mRNA 0.49 10 20932530 20940432

Neighbor

gene id symbol gene type direction distance location
LOC103027406 NA coding downstream 173801 20753938 ~ 20758729 (-)
LOC107197722 NA coding downstream 213849 20709836 ~ 20718681 (-)
LOC103038689 zgc:55733,LOC108260929,LOC107751522,LOC107566606,LOC107702784 coding downstream 224880 20691929 ~ 20707650 (-)
LOC103029107 NA coding downstream 362415 20551797 ~ 20570115 (-)
LOC103039622 LOC105906630 coding downstream 383794 20532218 ~ 20548736 (-)
LOC111195255 LOC107558209 coding upstream 96449 21036881 ~ 21052668 (-)
LOC103026251 NA coding upstream 118752 21059184 ~ 21108034 (-)
kcnip2 kcnip2,LOC101469196,LOC106526488,LOC105900836,LOC106576844 coding upstream 196330 21136762 ~ 21273827 (-)
LOC103027134 tp53bp2 coding upstream 409127 21349559 ~ 21392008 (-)
LOC103024822 NA coding upstream 589029 21529461 ~ 21532413 (-)
G185976 NA non-coding downstream 5890 20919092 ~ 20926640 (-)
G185989 LOC108437859 non-coding downstream 187857 20741649 ~ 20744673 (-)
G185986 NA non-coding downstream 192656 20738882 ~ 20739874 (-)
G185985 NA non-coding downstream 192831 20738690 ~ 20739699 (-)
G185974 NA non-coding downstream 231468 20699652 ~ 20701062 (-)
G186026 NA non-coding upstream 165635 21106067 ~ 21106285 (-)
G186022 NA non-coding upstream 173730 21114162 ~ 21118432 (-)
G186031 NA non-coding upstream 185787 21126219 ~ 21130177 (-)
G186096 NA non-coding upstream 405928 21346360 ~ 21348271 (-)
G186110 NA non-coding upstream 454587 21395019 ~ 21395732 (-)
LOC103038058 slit1 other downstream 15906 20764128 ~ 20916624 (-)
G185990 NA other downstream 180257 20748164 ~ 20752273 (-)
LOC103028253 ndrg2,LOC108437864,LOC107574080,LOC107657174,LOC106577998 other downstream 253916 20640338 ~ 20678614 (-)
G185943 NA other downstream 305268 20571189 ~ 20627262 (-)
LOC111195252 LOC108260666,LOC108412153 other downstream 805438 20117426 ~ 20127092 (-)

Expression


Co-expression Network