xpa


Basic Information

Item Value
gene id xpa
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5199748 ~ 5204732 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682133.1
AGATGGTGCTCTATGTCTGTAGAGGACTCGGTGCGCTGGAGAAGAAGAATAAGCAGGACATAAACAAAGACAGTTAACGTTAAGTTAGTCAGGGTGAATGGATTAATGTGAGAAGCGTCTTTAGTTTTTATCTCAGATTCAGATCAGATCCGGAAGAGTTTAACCGGATCGAGTCTGTACACGTGTCCTCTCCCCGGTGTCGGTTCTGTGggctgagtgagtgagtgtgtctgTAGTTCTGGTGGTGCTGCTCCTGCTCTGAACTCTGTTAAAGgataatatttagttttaatggATTCCTCCGGGTCCGGTGGAGCAGCTGAGCCTGAGGAGAAGCCCCGCACTGAGCCTCTCCCCCCGGCTGTTCTCGCCCGGATCGAGAGGAACCGCCAGCGGGCGCTGCTGCTCCGACAGGCGCGCCTCGCCCGCGCAGCGCCCGCTGCTGGAGACGGGTCAACTGCAGCAAAAGTGTCCAAAACCATAGATTCTGGCGCAGGATTCCTTtgtgtgtgtgattacagGGATAATGACGTAAAGCATCGGCTGATTTCTCGGACGGAGGCGAAGCACCAGTATTTATTGAAGGACTGTGATCTGGACCTGAGAGAACCACCACTGCGCTTCGTCCTGAAGAAGAACCCCCACAACCGCTGGGGGGACATGAAGCTCTACCTGAAAACACagGTGGTGAAACGCTCTCTGGATGTTTGGGGCAGTGAGGAGGCGCTAGAGGAGGCTCGTGAGAGCCGAGAGGAGAACAGGGAGGTGCAGAAACAGAAACGCttcaataaaaaagtgaaagaGCTGAGACGAGCGGTCAGGAGCAGCATGTTCAAGAAGGACACCAGCGTCCACCAGCATGATTACGGGCCAGAGGAAGTGGTGGATGAAGAAGAGGACCAGTATAGGAAAGTGTGTAAAACTTGCGGACACCAGCTCACCTATGAGAAGATGTAGATTCGGGTGTGCTCCAAACCATGACCACATTCACTCTGTagggaggaagaggaagtgTGAAAATGAGGGAGGATCAGATCAAGCTGCCACTAggtcaaaacaaacaaaacaaaaaaattctaATAGTTTCTTATGTTTTCTCTACTTCTTCTttgtttcttcttatttttttctttctcccttaCTGATGttacatatatttgttttactaCCTCATCTCTACCTTCATTTCCATGTCTTATCTGTTCTCTTTTGTATCCAACGTTTGTCAAAAAATATGACCAGTACATCCATCACAAGTGCTCAGCATCGGTGGATGAACATC

Function

NR:

description
PREDICTED: DNA repair protein complementing XP-A cells isoform X1

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K10847 XPA; DNA-repair protein complementing XP-A cells

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682133.1 True 1282 mRNA 0.49 6 5199748 5204732

Neighbor

gene id symbol gene type direction distance location
LOC111195182 saraf coding downstream 16734 5177370 ~ 5183014 (-)
LOC111195181 NA coding downstream 41321 5155745 ~ 5158427 (-)
LOC111195261 NA coding downstream 124557 5064100 ~ 5075191 (-)
LOC111195179 NA coding downstream 140992 5036077 ~ 5058756 (-)
LOC103030534 LOC108441328,LOC108260848,LOC105903575,LOC105020871 coding downstream 230056 4953812 ~ 4969692 (-)
LOC103026500 saraf coding upstream 3858 5208590 ~ 5213227 (-)
LOC111195262 NA coding upstream 174985 5379717 ~ 5380823 (-)
LOC103031479 mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134 coding upstream 415460 5620192 ~ 5694606 (-)
LOC111195189 NA coding upstream 630927 5835659 ~ 5844491 (-)
LOC111195190 klf12b,klf12,LOC107668887,LOC107740907 coding upstream 661302 5866034 ~ 5890681 (-)
G182832 NA non-coding downstream 58693 5140807 ~ 5141055 (-)
G182820 NA non-coding downstream 99797 5098994 ~ 5099951 (-)
LOC111195180 NA non-coding downstream 166900 5029122 ~ 5032848 (-)
G182720 NA non-coding downstream 258621 4935610 ~ 4941127 (-)
LOC111195178 NA non-coding downstream 310662 4882275 ~ 4889086 (-)
G182845 NA non-coding upstream 40551 5245283 ~ 5283507 (-)
G182846 NA non-coding upstream 48161 5252893 ~ 5257091 (-)
G182852 NA non-coding upstream 64259 5268991 ~ 5280554 (-)
G182861 NA non-coding upstream 102629 5307361 ~ 5320223 (-)
G182869 gne,LOC106602595 non-coding upstream 126297 5331029 ~ 5334461 (-)
LOC103027068 NA other downstream 90650 5107036 ~ 5109098 (-)
G182501 NA other downstream 1649335 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1745162 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 3487611 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 4691684 494190 ~ 508064 (-)
LOC111195184 NA other upstream 81214 5285946 ~ 5295716 (-)
G183043 NA other upstream 906638 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1147443 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 1217371 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1960661 7165393 ~ 7303192 (-)

Expression


Co-expression Network