LOC111195262


Basic Information

Item Value
gene id LOC111195262
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5379717 ~ 5380823 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682134.1
TGTATCTTTCCTCTAAAGCATGATGTTAaataatctttgttttcaggtcatttgagagttttgttCTCTTTAGAGGAGAAAAATTTGCAATTggcaccttaaccctttctcataattagaTTCAccactttttcataccactgtttTAAAGAAGATGTGTCAAATGAATGTAAACCCTGGACTGAGCATTTTGTGTCCTCTCTGTCCAGGACCTAGAGATGTGAGGCTGGTGGATGGGGGCAGCCGCTGTGCTGGAACAGTGGAGATATTTCACAGTGGAGAGTGGAGGAAAGTAAGCGAAGATTACTGGTCCATGAATGACGTTTCTGTGGTGTGCAGGCAGCTGAACTGTGGCTCCGCTCTTGCAGCTATAACGAGAAGGTCCAAGAAAAAGCAGAGTGGGTGGAACGTTGGCTTTTACTGTAGAGGTTCGGAATCTGAACTGAGGAAGTGTATAAGCTACAATAATGAACTATATCAGATTAACGCTGGAGTGATCTGTTCAGATCTCCTGGAGCCGCCCACCACTTCCTTCTCTACTACCATAAGAGTGCGTAGAGCTCTTCAGGTGTTCGAGGTTTTCAGGGGCCACAGCTTCAGCATCACCTGTTCCATTGAGTCAACGTACCCAGGAGGTTTCTTCCACCTCAAACTGCCCTGGACCAACAGAAGCCACACCCAGACAGCTGTCAATCACTCAGCCTCCTTCCTCTTTCCTGCTGCAGATGATTCCCACCAGGGGAACTACAGCTGTGTCTATGACAACCAAGTCACCTTCGAGAGTGAATTACTCGTAAACGAGACTACATGGAGGGCATCGAATGTCACTCAGAATTTCTCCTCTGAGAGTGAACCTCTCTCAATCACTGTTACAGGTAACCTGCTCTTTAAAACTGAGGAGATTATCACTTTATTAGTAAAACGATTCTTGATAAAGTTGTGTGTGTTCCAGATTCTCCTTTACCTGCAGTCATCATCAGAATCCTGCTGGTACTCTTTCTGTTGCTGTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682134.1 True 1012 mRNA 0.45 2 5379717 5380823

Neighbor

gene id symbol gene type direction distance location
LOC103026500 saraf coding downstream 166490 5208590 ~ 5213227 (-)
xpa NA coding downstream 174985 5199748 ~ 5204732 (-)
LOC111195182 saraf coding downstream 196703 5177370 ~ 5183014 (-)
LOC111195181 NA coding downstream 221290 5155745 ~ 5158427 (-)
LOC111195261 NA coding downstream 304526 5064100 ~ 5075191 (-)
LOC103031479 mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134 coding upstream 239369 5620192 ~ 5694606 (-)
LOC111195189 NA coding upstream 454836 5835659 ~ 5844491 (-)
LOC111195190 klf12b,klf12,LOC107668887,LOC107740907 coding upstream 485211 5866034 ~ 5890681 (-)
tbc1d1 tbc1d1 coding upstream 547915 5928738 ~ 6024934 (-)
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding upstream 649887 6030710 ~ 6048490 (-)
G182871 clta non-coding downstream 16645 5339971 ~ 5363072 (-)
G182875 NA non-coding downstream 20773 5357542 ~ 5358944 (-)
G182876 NA non-coding downstream 37259 5341371 ~ 5342458 (-)
G182869 gne,LOC106602595 non-coding downstream 45256 5331029 ~ 5334461 (-)
G182861 NA non-coding downstream 59494 5307361 ~ 5320223 (-)
LOC111195188 NA non-coding upstream 17747 5398570 ~ 5453760 (-)
G182890 NA non-coding upstream 36580 5417403 ~ 5417935 (-)
G182908 NA non-coding upstream 113019 5493842 ~ 5496733 (-)
G182922 NA non-coding upstream 164057 5544880 ~ 5545427 (-)
G182943 LOC108414272,LOC107741621,LOC107564376,LOC107559181,LOC108414004,LOC107559180,LOC108415460 non-coding upstream 328556 5709379 ~ 5710339 (-)
LOC111195184 NA other downstream 84001 5285946 ~ 5295716 (-)
G182810 saraf other downstream 166566 5177376 ~ 5213151 (-)
LOC103027068 NA other downstream 270619 5107036 ~ 5109098 (-)
G182501 NA other downstream 1829304 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1925131 3395119 ~ 3454586 (-)
G183043 NA other upstream 730547 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 971352 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 1041280 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1784570 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 2109252 7490075 ~ 7502429 (-)

Expression


Co-expression Network