LOC103031479 (mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134)


Basic Information

Item Value
gene id LOC103031479
gene name mtnr1aa,LOC107656395,LOC107746022,LOC107702348,LOC107754134
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 5620192 ~ 5694606 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682135.1
ATGATCCTGAATGGAAGCTACCGGGAACGGCTCTTGCGTTCGAGCAGCGGCCGCCTGGGTGGCCATCCCCAGCTGGGCTGCTTCCTCATCTTCACCATCGTGGTGGATATTCTGGGCAACCTACTGGTCATCTTCTCTGTCTACAGGAACAAGAAGCTCCGGAACGCAGgCAACATCTTCGTCGTGAGCCTGGCCGTGGCCGACCTGGTGGTGGCGCTCTACCCCTACCCTCTGGTGCTGACGGCAATCTTCCACCGGGGGTGGAACCTGGGCTCGACCCACTGCCAGATCAGTGGCTTCCTGATGGGCGTCAGCGTGGTGGGCTCCATCTTCAACATCACGGGCATCGCCGTCAACCGCTACTGCTACATCTGTCACAGCCTCAAGTACGACAAGCTGTTCAGCGACAAGAACTCTGCGTGCTACGTGGTGCTGATCTGGGTACTGACCGTGCTGGCCATCATACCCAACCTGTTCGTAGGCTCGCTGCAGTACGACGCCCGCGTGTACTCGTGTACCTTCGAGCAGTCGGCCAGCTCGGCCTACACCATCGCAGTGGTCTTCTTCCACTTCATCCTGCCCATCATGGTGGTCACCTACTGCTACCTGCGGATCTGGGTGCTCGTCATTCAGGTGAGGCGGCGGGTGAAGCCCGACAACCGGCCCAAGCTGACGCCGCACGACGTCCGCAACTTCGTCACCATGTTCGTGGTGTTCGTGCTCTTCGCCGTGTGCTGGGCGCCGCTCAACTTCATCGGCCTGGCGGTGGCGGTGGCGCCCCAGCGATTGGCGCCGATCATCCCCGAGTGGCTGTTTGTGGCCAGCTACTTCATGGCGTACTTCAACAGCTGCCTCAACGCCATCGTCTATGGCGTGCTCAACCAGAACTTCCGCCGCGAGTACAAGCGTATCGTGGTGTCCGTGTGCACGGCCCGCATCTTCTTCCCCGAGAGCTCCAACGAGGCGCAAGAGAGGCTCAAAAGCAAGCCGTCTCCGCTAATGACCAACAACAACCAGGTCAAGGTGGACTCGGTGTGAAACACGTTAGGCTGGCTTTACGGGGTGCTAAAGCTTTCGCGCAACGAGCGCTATGAAATGAAGTTGCCGTGCAACCTGTGGTCAAGATAAGCAATTCCACGACACAAAAGTAGTGGAATATtgatggtaccactttaaaataagactacctttataaagggtttataaatggtttacaattattttaataatggtcACTAAttataaattgtaaaatgtgttaaaaatcattaataatcagttataacacatacgtagaaagtgCAACAATGACCAAATAGTTTGCCAAATGAAAGTGAACCCACAGCAATctacattgttgccctttctacgtatgtgttataactttgtttttgattatactttcagttaacagctgtgctgaactcctcaTGATATTTgcataatgttctaatccacatTATTGCAAAAACTACTAACTCAACTAAGTCaagaaaaatgactttaagaaatggaaaaaaaaaaagtatcctcaagtgcagtcgcaaagaccatcgaATACGTAAAagtggtgaaactggcactcatcaggaccagcccAGGAAAGGAAGGCAGAGAGTTTTCAAATTTGACCAAGAGGAAATCTTTGCGAACTACAGAACCAGTTTAAATTTGGATACAGCCTCAATTCAGAgtttgttcattattttaaaatgttctgcttcgtagattaatactaaatataT

Function

symbol description
mtnr1aa Predicted to enable G protein-coupled receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within rhythmic process and signal transduction. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in female organism. Orthologous to human MTNR1A (melatonin receptor 1A).

NR:

description
PREDICTED: melatonin receptor type 1A-A

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0048511 rhythmic process biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008502 melatonin receptor activity molecular_function

KEGG:

id description
K04285 MTNR1A; melatonin receptor type 1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682135.1 True 1745 mRNA 0.50 3 5620192 5694606

Neighbor

gene id symbol gene type direction distance location
LOC111195262 NA coding downstream 239369 5379717 ~ 5380823 (-)
LOC103026500 saraf coding downstream 406965 5208590 ~ 5213227 (-)
xpa NA coding downstream 415460 5199748 ~ 5204732 (-)
LOC111195182 saraf coding downstream 437178 5177370 ~ 5183014 (-)
LOC111195181 NA coding downstream 461765 5155745 ~ 5158427 (-)
LOC111195189 NA coding upstream 141053 5835659 ~ 5844491 (-)
LOC111195190 klf12b,klf12,LOC107668887,LOC107740907 coding upstream 171428 5866034 ~ 5890681 (-)
tbc1d1 tbc1d1 coding upstream 234132 5928738 ~ 6024934 (-)
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding upstream 336104 6030710 ~ 6048490 (-)
frmpd1 frmpd1,LOC107570223 coding upstream 358129 6052735 ~ 6100443 (-)
G182922 NA non-coding downstream 74765 5544880 ~ 5545427 (-)
G182908 NA non-coding downstream 123459 5493842 ~ 5496733 (-)
LOC111195188 NA non-coding downstream 166432 5398570 ~ 5453760 (-)
G182890 NA non-coding downstream 202257 5417403 ~ 5417935 (-)
G182871 clta non-coding downstream 257120 5339971 ~ 5363072 (-)
G182943 LOC108414272,LOC107741621,LOC107564376,LOC107559181,LOC108414004,LOC107559180,LOC108415460 non-coding upstream 14773 5709379 ~ 5710339 (-)
G182949 NA non-coding upstream 19281 5713887 ~ 5714280 (-)
G182951 NA non-coding upstream 20088 5714694 ~ 5715119 (-)
G182956 NA non-coding upstream 140385 5834991 ~ 5835563 (-)
G183016 NA non-coding upstream 267852 5962458 ~ 5963350 (-)
LOC111195184 NA other downstream 324476 5285946 ~ 5295716 (-)
G182810 saraf other downstream 407041 5177376 ~ 5213151 (-)
LOC103027068 NA other downstream 511094 5107036 ~ 5109098 (-)
G182501 NA other downstream 2069779 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 2165606 3395119 ~ 3454586 (-)
G183043 NA other upstream 416764 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 657569 6352175 ~ 6408023 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other upstream 727497 6422103 ~ 6426583 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 1470787 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 1795469 7490075 ~ 7502429 (-)

Expression


Co-expression Network