LOC111195268


Basic Information

Item Value
gene id LOC111195268
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 7135775 ~ 7149290 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022682140.1
GACACTGTAAATTACTCCAGAGTAGAATGGAGATGAAGGATGATACCTATGTAAATGAGGGATATGTTTCAGACAATGAAAATCTATATGAAGACATAGAAGAGGTGAACATAGAGTTTCATAAAGTCAAAAGCAACCAAAGTAAATCTGGCATCGTTCACACTAAGAAGACGAAAAACCTTTACTCTAATAATGGAGCTGTGATCACCTCTCACCCAGAGAAAGCAGATTCCCAGCTCAACGAGAGTCGCTCTGCAGGAAGCAGACGCTACAGACTGGCTGCAGTGGGTCTGGGTCTGCTGTGTGTTCTCCTGCTGACTGCCATCACAGTGCTGTGGATCCAGTTCAAccacctgactgcagagagagaccagttacagaccagttacaccaacctgactgcagagagagaccagttacagaccagttacaccaacctgactgcagagagagatggGCTCCAGAAAAGGCTTTCTGAACTGGAAAAAGCAAATAGGGAAGGATGGATCTACTTCAGCTTCAGTCTTTACTACGTCTCTACTGAGAGGAAGAACTGGACTGAGAGCAGAAACGACTGCAGAAAGAGAGGATCAGACCTGGTGATCATCAACAGCAAAGaagaacagAGCTTCATTAACGTGTTGAGAAAAGATCAGTGGGTTTGGATTGGTCTGAGTGACAATGAAACAGAGGGGGTCTGGAAATGGGTGGACGGATCAAACCTGACGACTAGGTTCTGGTACCCTGGACAAcccaacaataataacaatgcGGACTGTGTTCTAGCTGGCTATTTGTCTGATCCTGTGAATAACTGGGCTGATTATCCCTGTAATACTTCGTTGGTTTGGATCTGTGAAAAGAGAATATAA

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko04672 Intestinal immune network for IgA production
ko05168 Herpes simplex virus 1 infection
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022682140.1 True 872 mRNA 0.45 5 7135775 7149290

Neighbor

gene id symbol gene type direction distance location
melk melk,LOC107750464 coding downstream 731979 6380403 ~ 6403796 (-)
zcchc7 NA coding downstream 898664 6150690 ~ 6237111 (-)
LOC103028109 NA coding downstream 995422 6127155 ~ 6140353 (-)
frmpd1 frmpd1,LOC107570223 coding downstream 1035332 6052735 ~ 6100443 (-)
pgm2 pgm2,LOC107746017,LOC107591526,LOC107551595 coding downstream 1087285 6030710 ~ 6048490 (-)
LOC111195269 NA coding upstream 15148 7164438 ~ 7168366 (-)
LOC111195200 NA coding upstream 31588 7180878 ~ 7188349 (-)
LOC103027790 LOC108443989,LOC108260977,LOC105904014 coding upstream 42301 7191591 ~ 7201973 (-)
LOC103041735 glrba,LOC108443987,LOC107702391,LOC107591559,LOC107655919,LOC107548353 coding upstream 160231 7309521 ~ 7368234 (-)
wdr19 wdr19,LOC107591558,LOC107750430 coding upstream 230954 7380244 ~ 7417033 (-)
G183188 NA non-coding downstream 255745 6877147 ~ 6880030 (-)
G183134 NA non-coding downstream 469233 6474990 ~ 6666542 (-)
G183158 NA non-coding downstream 499463 6592022 ~ 6636312 (-)
G183152 NA non-coding downstream 574174 6536195 ~ 6561601 (-)
G183121 NA non-coding downstream 768602 6356281 ~ 6367173 (-)
G183306 NA non-coding upstream 331091 7480381 ~ 7489159 (-)
G183309 NA non-coding upstream 354971 7504261 ~ 7506356 (-)
G183311 NA non-coding upstream 367463 7516753 ~ 7517491 (-)
G183299 NA non-coding upstream 369856 7519146 ~ 7520907 (-)
G183327 NA non-coding upstream 1545489 8694779 ~ 8742963 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other downstream 709192 6422103 ~ 6426583 (-)
tmsb10 NA other downstream 727752 6352175 ~ 6408023 (-)
G183043 NA other downstream 1022683 6111370 ~ 6113092 (-)
LOC111195184 NA other downstream 1840059 5285946 ~ 5295716 (-)
G182810 saraf other downstream 1922624 5177376 ~ 5213151 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other upstream 16103 7165393 ~ 7303192 (-)
LOC111195271 NA other upstream 340785 7490075 ~ 7502429 (-)
G183559 NA other upstream 2506023 9655313 ~ 9657614 (-)
G183585 NA other upstream 2696532 9845822 ~ 9852381 (-)
G183880 NA other upstream 4156999 11306289 ~ 11306821 (-)

Expression


Co-expression Network