LOC111195176


Basic Information

Item Value
gene id LOC111195176
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 4488564 ~ 4491390 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651510.1
GCTGCCCTCTCATGGTTGAAAACTCTGAAAGCGATGAATCCAGGCTCAGACTCTCCTAAAGGATTCAAATAAAGACAAATAACAGTGATTTTTATATCGCCCAAACCTGTTACTCAGCAAAGGTTCGAGCCTCATATGTAGGCGTCACCTCATCTGTAATGACAGAACATTTGAAAGACTGTTTATCAAGTCAAATAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651510.1 True 200 lncRNA 0.41 3 4488564 4491390

Neighbor

gene id symbol gene type direction distance location
hgsnat LOC108411545 coding downstream 10272 4440549 ~ 4478292 (-)
pi4k2b pi4k2b,LOC107742490,LOC107702326,LOC107750041,LOC107656613 coding downstream 51366 4423892 ~ 4437198 (-)
c21h4orf33 cunh4orf33,c29h4orf33 coding downstream 92977 4391791 ~ 4395587 (-)
LOC103028206 NA coding downstream 197577 4280286 ~ 4290987 (-)
pcdh10 LOC108415737 coding downstream 332961 4104821 ~ 4155603 (-)
LOC103036327 LOC108415078,LOC107562921,LOC107702324 coding upstream 27740 4519130 ~ 4559920 (-)
LOC103027755 NA coding upstream 328550 4819940 ~ 4832478 (-)
LOC103031161 NA coding upstream 362259 4853649 ~ 4876273 (-)
LOC103029567 rbpja,LOC103029567,LOC108441335,LOC108260898,LOC107563830,LOC107742494,LOC105903551,LOC107562987,LOC107702317 coding upstream 399084 4890474 ~ 4904539 (-)
LOC103030845 LOC108441329 coding upstream 426744 4918134 ~ 4931683 (-)
G182571 NA non-coding downstream 329779 4157194 ~ 4158785 (-)
G182557 NA non-coding downstream 409155 4079080 ~ 4079409 (-)
G182550 NA non-coding downstream 431224 4057080 ~ 4057340 (-)
G182540 NA non-coding downstream 490914 3997441 ~ 3997650 (-)
G182534 NA non-coding downstream 555357 3933008 ~ 3933207 (-)
LOC111195177 NA non-coding upstream 22310 4513700 ~ 4515883 (-)
LOC111195163 NA non-coding upstream 301821 4793211 ~ 4794427 (-)
G182672 NA non-coding upstream 355495 4846885 ~ 4849992 (-)
G182671 NA non-coding upstream 356881 4848271 ~ 4849196 (-)
G182706 NA non-coding upstream 359199 4850589 ~ 4851408 (-)
G182501 NA other downstream 938151 3547633 ~ 3550413 (-)
LOC103039001 caspase-3,LOC108441697,LOC103370277 other downstream 1033978 3395119 ~ 3454586 (-)
LOC103021730 fat1,fat1a,LOC108441695,LOC107702333 other downstream 2776427 1585495 ~ 1712137 (-)
cisd2 cisd2 other downstream 3980500 494190 ~ 508064 (-)
LOC103026712 NA other downstream 4440270 45736 ~ 48294 (-)
LOC103027068 NA other upstream 615646 5107036 ~ 5109098 (-)
G182810 saraf other upstream 685986 5177376 ~ 5213151 (-)
LOC111195184 NA other upstream 794556 5285946 ~ 5295716 (-)
G183043 NA other upstream 1619980 6111370 ~ 6113092 (-)
tmsb10 NA other upstream 1860785 6352175 ~ 6408023 (-)

Expression


Co-expression Network