LOC111195215


Basic Information

Item Value
gene id LOC111195215
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 11157282 ~ 11177184 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651526.1
GTGGAGCTCTTTAACCTCCTGCGTTGGTGTGGCTGATCATGAAGTCCTGATCTGCAGAACCTGATGATTTCTGCTAGATTTGCAGGGTCACGTTGGGTCCACAGCCTACTTGGAATCATTTGGCCCAAGGCAGAAAATCCCCCCTGGACGGGTCACCAGTCCGACGCAAGGAACTGCAGGGGAGCCTGCCTGATGGAGACAAAAACGGTTGTAAATGAGGTCCTTGAGTGGCCACGTCCTAACACTGAAGAAGCCCAGTCCGACGCCTGGTGTTGAGAGCACTGCAGGTGTGTGCTGGGGGAAAGTAGCACACCTGCCCAGTGGCCTGACTGTTGCCGTTTAGTAGAGAGCATTTTTATCAGGCTGTGCACCATCTATCCCAGCCCAAAAAGAAAAGTCTCGGGAGCAGTCTCAAGACTGTTTCTGTTACTCAGAGGCTGCCGCGAGATCAGGCAGCGTGTGTTTGGGAATAACACGGTGATGCAGGGAACATCAGTGCAGCTGCTGGAGGTGAATCAGAACACCCTGATCCAGTGGCATTATAACAGGGTGAAAACAGTCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651526.1 True 564 lncRNA 0.53 3 11157282 11177184

Neighbor

gene id symbol gene type direction distance location
mogs mogs,LOC106609973,LOC106602766 coding downstream 649887 10498845 ~ 10507395 (-)
LOC103029885 LOC108434384,LOC108435548,LOC107702154 coding downstream 678108 10474402 ~ 10479174 (-)
fbxo41 fbxo41,LOC108260496,LOC107689471 coding downstream 727874 10332167 ~ 10429408 (-)
smox smox,LOC107689473,LOC107551695,LOC107551688,LOC107692173 coding downstream 937421 10197406 ~ 10219861 (-)
LOC111195209 NA coding downstream 992388 10162402 ~ 10164894 (-)
ston1 ston1 coding upstream 235426 11412610 ~ 11426503 (-)
rps27a rps27a coding upstream 252065 11429249 ~ 11431897 (-)
ccdc88a ccdc88a coding upstream 333996 11511180 ~ 11574143 (-)
ppp4r3b ppp4r3b,smek2 coding upstream 405654 11582838 ~ 11594672 (-)
pnpt1 pnpt1,LOC106607983 coding upstream 420094 11597278 ~ 11611851 (-)
G183854 NA non-coding downstream 312683 10844201 ~ 10844599 (-)
G183840 NA non-coding downstream 497948 10658997 ~ 10659334 (-)
G183771 NA non-coding downstream 710510 10446561 ~ 10446772 (-)
G183769 NA non-coding downstream 724091 10430741 ~ 10433191 (-)
LOC111195213 NA non-coding downstream 894282 10254325 ~ 10263000 (-)
G183884 NA non-coding upstream 169726 11346910 ~ 11347163 (-)
G183960 NA non-coding upstream 290673 11467857 ~ 11468253 (-)
G183963 NA non-coding upstream 299452 11476636 ~ 11479389 (-)
LOC111195221 NA non-coding upstream 1351390 12528574 ~ 12633591 (-)
G184094 NA non-coding upstream 1505311 12682495 ~ 12682697 (-)
G183585 NA other downstream 1304901 9845822 ~ 9852381 (-)
G183559 NA other downstream 1499668 9655313 ~ 9657614 (-)
LOC111195271 NA other downstream 3654853 7490075 ~ 7502429 (-)
LOC103028119 gria2a,LOC108443988,LOC107548351,LOC108260487,LOC107750427,LOC107702389,LOC107745055,LOC107655932,LOC107591557 other downstream 3854090 7165393 ~ 7303192 (-)
LOC111195197 zgc:195282,LOC108413380,LOC107702293,LOC107591529,LOC107754142,LOC108260812,LOC107656338 other downstream 4730699 6422103 ~ 6426583 (-)
G183880 NA other upstream 129105 11306289 ~ 11306821 (-)
gtf2a1l NA other upstream 225523 11402707 ~ 11411644 (-)
G184051 NA other upstream 1018028 12195212 ~ 12196658 (-)
LOC111195225 NA other upstream 2049149 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 2373948 13551132 ~ 13594753 (-)

Expression


Co-expression Network