LOC111195221


Basic Information

Item Value
gene id LOC111195221
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 12528574 ~ 12633591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651533.1
CCACGGTTGGAGAAAAATGTCAGAAAGAGAGCTAACTTAgcagttagctagtttaaagtTTCTGTGTTAGAAAAACTcggtgttttttgtgtttattaagtgAACTGAGGCGTCGGGCAGTGTCTGTTTACCTATTTAACTGGTTCTGAGCTGTATTTGCCCTCTAACGTCGAGCTTTATACTCTAAACTTGGACATTTCCACTGGGCTagctggctaagttagctagctaacgctaactagcgcTAACCAGCTTTATGGAGCTGTAGGGAGTGTTAAATGCCATACAGAGGACAGTTGGAGCAAGAGCTGACAGATTCATTTCACTCCCAGCGGAAATAACACAGCTGGACGGACGGAGAACTTGAACCTGCTGCTGTCAGCTGAGAGAGCTGCTGGTTAAGGTGGTGCGGAACTGAGAGAGCTGCTGGTTAAGGTGGTGCCGGACTGGGCGCTGCTGGTTAAGGTGGTGCGGAGCTGAGACAGGTGCTAGTTAAGGTCGTGCGGAGATGGGCTGCTGCTGAGAGCTGATTGTCTGAGCGCGCTGCACTGACTGAGGATGCTGCGTGTGATTAAAGCTACCATCAGGCTCCCAATAAAAGTGCAGGTAGGTGGCACTCTCTCGCAACATCACTCCaagtgtgatgttggtcagcacactCATCTGTTGGCTTATGTATCGGAGCTGGGGATCCGGCGCTTTCCTCGGAGTGCACTGGCTTCTTATTGATGCTGCATCACATTTTAGAGGAGCAATGCACAAGAGATCACCATCAACAGGATCTGTTTGAATCTTCAAATGCGAGCAAACAACTaaacagaacaacatttaaagagaGTCGGATACTGGCAGGGCATTGGAAAGTGGTACAACACCAGCAGCACAGCACAACAATACAGGTAATATGTCTGAAGatgtgtattattgtgtattaaagtcaaaaaatgacattttcctGTTTTGTCTGTCTATATATTCTCTGTCATGCACaaatgtccaaaaaaacattttattaactttcagtggaaggttactttaaataaagattttattcACACTGA

Function

GO:

id name namespace
GO:0120031 plasma membrane bounded cell projection assembly biological_process
GO:0044782 cilium organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0060271 cilium assembly biological_process

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651533.1 True 1061 lncRNA 0.45 4 12528574 12633591

Neighbor

gene id symbol gene type direction distance location
LOC103040758 LOC108427447 coding downstream 3254 11673093 ~ 12525320 (-)
cfap36 cfap36 coding downstream 901100 11613656 ~ 11627474 (-)
pnpt1 pnpt1,LOC106607983 coding downstream 916723 11597278 ~ 11611851 (-)
ppp4r3b ppp4r3b,smek2 coding downstream 933902 11582838 ~ 11594672 (-)
ccdc88a ccdc88a coding downstream 954431 11511180 ~ 11574143 (-)
LOC103046990 rasgrp2,LOC108427446,LOC108261011,LOC106608563 coding upstream 74061 12707652 ~ 12760931 (-)
mpdz mpdz coding upstream 182989 12816580 ~ 12879020 (-)
LOC103027614 LOC103027614 coding upstream 1165930 13799521 ~ 13807329 (-)
LOC103028152 NA coding upstream 1179807 13813398 ~ 13827899 (-)
drap1 drap1,LOC106608686 coding upstream 1417139 14050730 ~ 14058635 (-)
G183963 NA non-coding downstream 1049185 11476636 ~ 11479389 (-)
G183960 NA non-coding downstream 1060321 11467857 ~ 11468253 (-)
G183884 NA non-coding downstream 1181411 11346910 ~ 11347163 (-)
G183857 NA non-coding downstream 1341032 10955599 ~ 11187542 (-)
LOC111195215 NA non-coding downstream 1351390 11157282 ~ 11177184 (-)
G184094 NA non-coding upstream 48904 12682495 ~ 12682697 (-)
G184150 NA non-coding upstream 159191 12792782 ~ 12794964 (-)
G184152 NA non-coding upstream 161653 12795244 ~ 12795519 (-)
LOC111195223 NA non-coding upstream 172690 12806281 ~ 12812440 (-)
G184224 NA non-coding upstream 664144 13297735 ~ 13298115 (-)
G184051 NA other downstream 331916 12195212 ~ 12196658 (-)
gtf2a1l NA other downstream 1116930 11402707 ~ 11411644 (-)
G183880 NA other downstream 1221753 11306289 ~ 11306821 (-)
G183585 NA other downstream 2676193 9845822 ~ 9852381 (-)
G183559 NA other downstream 2870960 9655313 ~ 9657614 (-)
LOC111195225 NA other upstream 592742 13226333 ~ 13303680 (-)
LOC111195226 NA other upstream 917541 13551132 ~ 13594753 (-)
LOC103031091 map3k11,LOC108427450,LOC108260854,LOC107748023 other upstream 1355218 13988809 ~ 14040245 (-)
LOC103032041 NA other upstream 1430053 14063644 ~ 14116456 (-)
trnas-gcu_5 NA other upstream 1456115 14089706 ~ 14089787 (-)

Expression


Co-expression Network