LOC111195239


Basic Information

Item Value
gene id LOC111195239
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035917.1
NCBI id CM008320.1
chromosome length 21661149
location 15992016 ~ 16093276 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651562.1
CTTACCTTTCACTGTAAAGACAGCTGGACTATGTTGTCTTGGTGCTTTATCTGAAATGGAAAAAGGGTTGGAGCAAGCAAGGctgatacaaggtttttgcggATGATGCAAACGTTACTGGAGTATGAAGGGTCAACTGGAACACCCCCTGCAACAGACATTTCCCCCTACCCAATTAAGGGTATAGAAGCTGGGTGACCCGCCTGCTGCCACTCCCTAAGGACACAGATGTTCCAGTAAGGAGTCCCCACATCTGGAGCTCCAAGAATTCTACAAGAACGAGAGCTAAAATGACAAGAGGACAACAACCATAAGCATCCGGGATGGACTATCACACAGTGGAATCAGAATTCCAGAtcttttttggaagaaatggaCACCATTAGCTttggaccatccagactgttatcagcaagtTAAGATCTCTTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651562.1 True 431 lncRNA 0.45 5 15992016 16093276

Neighbor

gene id symbol gene type direction distance location
gpr75 gpr75,LOC107602942,LOC107683917,LOC107654975,LOC107553188,LOC107705414,LOC107739897 coding downstream 224236 15763186 ~ 15767780 (-)
pds5a pds5a,LOC107757607 coding downstream 284476 15684816 ~ 15707540 (-)
ugdh ugdh,LOC107757604 coding downstream 332450 15645138 ~ 15659566 (-)
rpl9 rpl9,LOC107671920,LOC107700291,LOC107709470 coding downstream 354924 15632254 ~ 15637092 (-)
rfc1 rfc1,LOC102787736 coding downstream 362011 15616094 ~ 15630005 (-)
dctpp1 dctpp1 coding upstream 1754 16095030 ~ 16096320 (-)
fam160a1 fam160a1 coding upstream 26398 16119674 ~ 16141270 (-)
rps3a rps3a,LOC107695588 coding upstream 86794 16180070 ~ 16184812 (-)
mab21l2 mab21l2 coding upstream 258298 16351574 ~ 16356009 (-)
trnaw-cca_46 NA coding upstream 483547 16576823 ~ 16576895 (-)
LOC111195237 NA non-coding downstream 25603 15941098 ~ 15966413 (-)
G184881 NA non-coding downstream 45558 15891780 ~ 15946458 (-)
G184874 NA non-coding downstream 219921 15771704 ~ 15772095 (-)
G184871 chrna9,LOC107700259,LOC107660492,LOC107548308,LOC107757584,LOC105009502 non-coding downstream 243030 15748657 ~ 15748986 (-)
G184870 NA non-coding downstream 247460 15744324 ~ 15744556 (-)
G184902 gatb non-coding upstream 3735 16097011 ~ 16098492 (-)
LOC111195238 NA non-coding upstream 360609 16453885 ~ 16462187 (-)
G184939 NA non-coding upstream 369402 16462678 ~ 16468266 (-)
G184944 NA non-coding upstream 401271 16494547 ~ 16541739 (-)
G184945 NA non-coding upstream 401454 16494730 ~ 16511182 (-)
smim14 smim14 other downstream 320062 15666111 ~ 15671954 (-)
smim18 smim18 other downstream 610808 15376658 ~ 15381208 (-)
LOC103043525 tapt1,LOC108434341,LOC107702406,LOC107750443,LOC107671913,LOC105908524 other downstream 651436 15309509 ~ 15340580 (-)
trnas-gcu_6 NA other downstream 1900426 14091509 ~ 14091590 (-)
trnas-gcu_5 NA other downstream 1902229 14089706 ~ 14089787 (-)
lrat lrat other upstream 804902 16898178 ~ 16901684 (-)
LOC103032582 NA other upstream 1136809 17230085 ~ 17241027 (-)
G185295 NA other upstream 1158991 17252267 ~ 17254633 (-)
G185311 emc4 other upstream 1202225 17295501 ~ 17300782 (-)
nutm1 NA other upstream 1220094 17313370 ~ 17328889 (-)

Expression


Co-expression Network