Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC111196687 |
| gene name | NA |
| gene type | misc |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NW_019170901.1 |
| NCBI id | APWO02000499.1 |
| chromosome length | 310558 |
| location | 192861 ~ 194963 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016064 | immunoglobulin mediated immune response | biological_process |
| GO:0002250 | adaptive immune response | biological_process |
| GO:0002252 | immune effector process | biological_process |
| GO:0002253 | activation of immune response | biological_process |
| GO:0050896 | response to stimulus | biological_process |
| GO:0065007 | biological regulation | biological_process |
| GO:0072376 | protein activation cascade | biological_process |
| GO:0006955 | immune response | biological_process |
| GO:0006956 | complement activation | biological_process |
| GO:0006958 | complement activation, classical pathway | biological_process |
| GO:0006959 | humoral immune response | biological_process |
| GO:0048583 | regulation of response to stimulus | biological_process |
| GO:0048584 | positive regulation of response to stimulus | biological_process |
| GO:0002376 | immune system process | biological_process |
| GO:0002682 | regulation of immune system process | biological_process |
| GO:0002684 | positive regulation of immune system process | biological_process |
| GO:0050776 | regulation of immune response | biological_process |
| GO:0050778 | positive regulation of immune response | biological_process |
| GO:0002443 | leukocyte mediated immunity | biological_process |
| GO:0002449 | lymphocyte mediated immunity | biological_process |
| GO:0002455 | humoral immune response mediated by circulating immunoglobulin | biological_process |
| GO:0002460 | adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains | biological_process |
| GO:0019724 | B cell mediated immunity | biological_process |
| id | description |
|---|---|
| ko05150 | Staphylococcus aureus infection |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU320520 | False | 325 | TUCP | 0.41 | 2 | 192861 | 193273 |
| XM_022686049.1 | True | 751 | mRNA | 0.42 | 3 | 192877 | 194963 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103028511 | NA | coding | upstream | 15083 | 162608 ~ 177778 (+) |
| LOC111196686 | NA | coding | upstream | 31386 | 156046 ~ 161475 (+) |
| LOC111196685 | NA | coding | upstream | 62520 | 121000 ~ 130341 (+) |
| LOC111196693 | NA | coding | upstream | 79453 | 106202 ~ 113408 (+) |
| LOC111196684 | NA | coding | upstream | 90167 | 95707 ~ 102694 (+) |
| LOC103028199 | NA | coding | downstream | 5677 | 200640 ~ 208869 (+) |
| LOC103027884 | NA | coding | downstream | 16941 | 211904 ~ 216369 (+) |
| LOC111196692 | NA | coding | downstream | 22850 | 217813 ~ 224768 (+) |
| LOC111196688 | NA | coding | downstream | 31886 | 226849 ~ 229983 (+) |
| LOC111196689 | NA | coding | downstream | 47352 | 242315 ~ 261740 (+) |
| G235513 | LOC108271652 | non-coding | upstream | 25238 | 160915 ~ 167623 (+) |
| G235498 | NA | non-coding | upstream | 38208 | 143600 ~ 154653 (+) |
| G235508 | NA | non-coding | upstream | 47666 | 144347 ~ 145195 (+) |
| G235490 | NA | non-coding | upstream | 103457 | 76417 ~ 89404 (+) |
| LOC111196695 | LOC108271652 | non-coding | downstream | 432 | 195395 ~ 198841 (+) |
| G235526 | NA | non-coding | downstream | 36586 | 231549 ~ 232370 (+) |
| G235527 | NA | non-coding | downstream | 37505 | 232468 ~ 234112 (+) |
| G235593 | NA | non-coding | downstream | 50452 | 245415 ~ 245619 (+) |
| G235600 | NA | non-coding | downstream | 93598 | 288561 ~ 291723 (+) |
| LOC103028116 | NA | other | upstream | 170292 | 20689 ~ 22569 (+) |
