LOC103028199


Basic Information

Item Value
gene id LOC103028199
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 200640 ~ 208869 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022686050.1
ATGAAGATCCTCCTCATCTTCACCCTCTACCTGATCTCAGACATCGACTATAAGAAGAATATCAGTGTGAAAGGTCACGTAGGACAAACAGTGAACATCAGCTGCAATTACCCACAATCCCTCATCAGTAAACCCAAGTTCCTCTGTAGGAGAAGGAGCACTGCTGACTGTTATTATACAGCATCTGCTAAAGAGAGTAAAAGGTGGATTAAGGAGGGGAAATTCTCTCTGTATGACGACAGAGCAAAGAAGACTTTCACAGTGAGCATCAGCAGTGTGACTGAGGGAGATTCTGGTGAATACTGGTGTGGAGCTGAATCAGACTGGGAAAAAGATCTTGGATACAAGGTTTATTTCACACAGATCAACCTCAGAGTTACTGCAGAACCAGGACAACCAGATACATCAACCCCCTCAAGAAGTTTCACTCAACCGAGCAtgaaaacaactttaaaaaacagtgaacaGCCCCAACAACGTTTAGTGACGACAAACACGCCAACAACAGAATTTCCAACGTTCTTCGTGATCACTGTTGTGTCTGTGATTCTGGTTCTGCTTCTAATCGGACTTTTAGTCTTCGTCGTCATTCTCCAAAAGAGGGTCAAAGCTCGAGCCTCAACATCAATCCAGTCCACCAGAGGATCCTCAAACACTAACACGGTCTATGAGGAGATAAAAGACACCAAACGCCATCCTTCACCAGATTCTGGAGCTTCCACAGTCCACCAGCTACCCACAAACCCCTCAGACCCTTCTCACACTCTCTACGATAATGTCCAAATCCGTCAATGTCCAAATCCCATCTACTCTACAGCTCCAGATCAGAACATCAACTCAACACCTCAAATACCCACAAGCTCCTCTGGTTCCTCAGCCAGTACTACTGAAGATCCAGCTTACGCCACGGTGAAGTTCACCAAGAATTATAATGTTACAGCAAAAGTCAACATGAAGGAGGAGTCATGTGACTACGCTACTGTCAAACATGCTAGCGGAAGTGGCTAggttattataatatatgtaatattataatttgtttTGACATAGTTTcataa

Function

GO:

id name namespace
GO:0048884 neuromast development biological_process

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko05310 Asthma

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022686050.1 True 1058 mRNA 0.44 6 200640 208869

Neighbor

gene id symbol gene type direction distance location
LOC103028511 NA coding upstream 22862 162608 ~ 177778 (+)
LOC111196686 NA coding upstream 39165 156046 ~ 161475 (+)
LOC111196685 NA coding upstream 70299 121000 ~ 130341 (+)
LOC111196693 NA coding upstream 87232 106202 ~ 113408 (+)
LOC111196684 NA coding upstream 97946 95707 ~ 102694 (+)
LOC103027884 NA coding downstream 3035 211904 ~ 216369 (+)
LOC111196692 NA coding downstream 8944 217813 ~ 224768 (+)
LOC111196688 NA coding downstream 17980 226849 ~ 229983 (+)
LOC111196689 NA coding downstream 33446 242315 ~ 261740 (+)
LOC103025438 NA coding downstream 62830 271699 ~ 275746 (+)
LOC111196695 LOC108271652 non-coding upstream 1799 195395 ~ 198841 (+)
G235513 LOC108271652 non-coding upstream 33017 160915 ~ 167623 (+)
G235498 NA non-coding upstream 45987 143600 ~ 154653 (+)
G235508 NA non-coding upstream 55445 144347 ~ 145195 (+)
G235490 NA non-coding upstream 111236 76417 ~ 89404 (+)
G235526 NA non-coding downstream 22680 231549 ~ 232370 (+)
G235527 NA non-coding downstream 23599 232468 ~ 234112 (+)
G235593 NA non-coding downstream 36546 245415 ~ 245619 (+)
G235600 NA non-coding downstream 79692 288561 ~ 291723 (+)
LOC111196687 NA other upstream 5677 192861 ~ 194963 (+)
LOC103028116 NA other upstream 178071 20689 ~ 22569 (+)

Expression


Co-expression Network