LOC111196688


Basic Information

Item Value
gene id LOC111196688
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019170901.1
NCBI id APWO02000499.1
chromosome length 310558
location 226849 ~ 229983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022686051.1
acagtcagacagagagaACGAGTGTTTAAGAGCCTCTAATATCAGTCTGAAGTGGATTAGAGCTGGTGCAGATCTGTAAAACTGAACTCAGGATGAAGATCCTCCTCATCTTCACCCTCTACCTGATCTCAGGTGGTGAATCCTCCAGTGAAGTGAGGGGATATTCAGGAGGAGGAGTTCTCATCAAGTGTAAATATGATAAAAGCTACACATCAAACTACAAGTACTTCTGTAAGGGTTCTGGGGTGAACTGTACCGACCTAATCAGGACAGGagttaaagataaagataaagtagtaaatacaggaagattCTTACTGATTGATAATACCAGCTCTGCAGAGTTATTGGTGATGATCAGAGAACTCACTGTAAAAGATTCTGAAAGGTACCAGTGTGGAGTTCATACAGGATCAAGTAAAGACTTCTACGCACAAGTGGAACTTAAGATAAACAAAGATCTACACCATGAGAAGTGTATCAATGCAGTTGGTTATAAAGTAGAAAGTCTGAACATCAGCTGCAAATACCCACAAACCCTTAAAAATCACCCCAAGTTTTTTTGTATAAGAGGAGCCAGTGGTTGTCTTTATAGAGCACCGGTTAAAGAGAGTAAAATATGGAGGACTATAGGAAAATTCTCTCTGTATGACAACAGAGAAACGGATATCTTCACTGTGAGATTCAATAATCTGACAAAAGGAGATTCTGGTGAATACTGGTGTGGAGCTGAATCCAACTGGGAATCTGATCATGgatacaagatttatttcacaCAGGTCAATCTATCGGTTACTGGTTTTCCTGAATTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022686051.1 True 815 mRNA 0.40 4 226849 229983

Neighbor

gene id symbol gene type direction distance location
LOC111196692 NA coding upstream 2081 217813 ~ 224768 (+)
LOC103027884 NA coding upstream 10480 211904 ~ 216369 (+)
LOC103028199 NA coding upstream 17980 200640 ~ 208869 (+)
LOC103028511 NA coding upstream 49071 162608 ~ 177778 (+)
LOC111196686 NA coding upstream 65374 156046 ~ 161475 (+)
LOC111196689 NA coding downstream 12332 242315 ~ 261740 (+)
LOC103025438 NA coding downstream 41716 271699 ~ 275746 (+)
LOC111196690 NA coding downstream 55087 285070 ~ 293691 (+)
G235510 NA non-coding upstream 24231 176938 ~ 202618 (+)
LOC111196695 LOC108271652 non-coding upstream 28008 195395 ~ 198841 (+)
G235513 LOC108271652 non-coding upstream 59226 160915 ~ 167623 (+)
G235498 NA non-coding upstream 72196 143600 ~ 154653 (+)
G235508 NA non-coding upstream 81654 144347 ~ 145195 (+)
G235526 NA non-coding downstream 1566 231549 ~ 232370 (+)
G235527 NA non-coding downstream 2485 232468 ~ 234112 (+)
G235593 NA non-coding downstream 15432 245415 ~ 245619 (+)
G235600 NA non-coding downstream 58578 288561 ~ 291723 (+)
LOC111196687 NA other upstream 31886 192861 ~ 194963 (+)
LOC103028116 NA other upstream 204280 20689 ~ 22569 (+)

Expression


Co-expression Network