G81412


Basic Information

Item Value
gene id G81412
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 5629630 ~ 5630428 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU92640
GCTTTAATTTATTTTTAATTCAGGGTAACAGTATACTAAAAACAGAAAAGTTTCTCCTTTGCATTTTGTCAAAATAATCCCCGTTCACACGGATCCACGAAAATGACTAAAAATGTCTGTATTCTGCTGCCAGGCCAGTAGTTGGCGATGTCACTTTGTAAAGAAACACTACGTGCCTATTGACTGTACACATAATACGCATGTGCATGACATCACCGTTTTCACAAATTCACATTTTTATAGTTTACAGTTCAGTTTCACCTCTGGTGCAGAATGTGTGAAACAGGTCTAAACCATCACCCAAAATGTAACCATAATCAATCAGAAAATTAAAAATGAAAAGTCATGCAGTGATTGTTTTTATGATTGATCATCGATGCTGCTCCCATACCTGCGCACTGACATATTTGGCGAACCACTCCCTGCCTTTCCCGTTCTCTCCAGTGCACAGCTCTCCAAAGCGAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU92640 True 466 lncRNA 0.39 2 5629630 5630428

Neighbor

gene id symbol gene type direction distance location
CI01000013_05607381_05608529 FOXL1 coding upstream 21060 5606883 ~ 5608570 (+)
CI01000013_05583328_05584677 B3GNT9 coding upstream 44926 5583328 ~ 5584704 (+)
CI01000013_05572116_05579830 BBS2 coding upstream 49491 5571340 ~ 5580139 (+)
CI01000013_05436977_05445492 NA coding upstream 184138 5436977 ~ 5445492 (+)
CI01000013_05402289_05403494 NA coding upstream 225703 5401587 ~ 5403927 (+)
CI01000013_05636898_05637901 NA coding downstream 6319 5636747 ~ 5638084 (+)
CI01000013_05698947_05741884 ZFPM1 coding downstream 68519 5698947 ~ 5741884 (+)
CI01000013_05808968_05845757 NA coding downstream 178540 5808968 ~ 5846518 (+)
CI01000013_05847899_05849819 NA coding downstream 217471 5847899 ~ 5850194 (+)
CI01000013_05851074_05870330 TANGO6 coding downstream 220646 5851074 ~ 5870870 (+)
G81411 NA non-coding upstream 4284 5621683 ~ 5625346 (+)
G81408 NA non-coding upstream 11519 5617826 ~ 5618111 (+)
G81404 NA non-coding upstream 14380 5614904 ~ 5615250 (+)
G81306 NA non-coding upstream 50982 5513292 ~ 5578648 (+)
G81380 NA non-coding upstream 90686 5491058 ~ 5538944 (+)
G81322 NA non-coding downstream 27108 5657536 ~ 5672245 (+)
G81421 NA non-coding downstream 118358 5748786 ~ 5749042 (+)
G81608 NA non-coding downstream 130931 5761359 ~ 5761564 (+)
G81615 NA non-coding downstream 137871 5768299 ~ 5768506 (+)
G81616 NA non-coding downstream 138357 5768785 ~ 5768985 (+)
G80845 NA other upstream 793398 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 1563801 4050837 ~ 4065829 (+)
G80062 NA other upstream 2044846 3584008 ~ 3584784 (+)
G79309 NA other upstream 3162459 2466765 ~ 2467171 (+)
G77695 NA other upstream 4676661 946521 ~ 952969 (+)
CI01000013_06050285_06059640 NA other downstream 425870 6049864 ~ 6060269 (+)
CI01000013_06076169_06080164 NA other downstream 448134 6075400 ~ 6081684 (+)
G81994 NA other downstream 1705517 7335945 ~ 7338239 (+)
G82168 NA other downstream 2397910 8028338 ~ 8041343 (+)
G82581 NA other downstream 3698901 9329329 ~ 9334948 (+)

Expression


Co-expression Network