G81780


Basic Information

Item Value
gene id G81780
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 6387839 ~ 6388687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU93063
GGGCCACAGAGAGGTTTTGGAGCAAAGGCAGCCAATAAGATTCCAGATCATGAATAGAAGATATAAGATTGTCATCCAGGTAAAGGTCCCTCAAAAGAACGTGGTTCTGCAGGACAGGCAGCTATGCCATTGTCAGACTGTTTCCCCTGAGGTCCAATGTGTTAAGGAGTGCGCAATTCTCCAAACCCTCAATGTGGCTTAGGTGGTTGTACGAACAGTCCAGATGCAGAAGGGTATAAATTTCCTTCAAACCTCTCATGCTGAGCAGCTGGTTATGGTCCACTGATAATCGCAGAAGCATTTTCAGGGGTCCTAAACCACCTAAGAAAGCAAAGATATATCATTCAGTCAGTGCTGGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU93063 True 360 lncRNA 0.46 2 6387839 6388687

Neighbor

gene id symbol gene type direction distance location
CI01000013_06311729_06313001 RASSF9 coding upstream 73715 6311729 ~ 6314124 (+)
CI01000013_06278898_06283356 MGAT4C coding upstream 102685 6278898 ~ 6285154 (+)
CI01000013_06209318_06233289 NA coding upstream 154456 6209096 ~ 6233383 (+)
CI01000013_06132773_06163282 NA coding upstream 224202 6132565 ~ 6163637 (+)
CI01000013_06076169_06080164 NA coding upstream 307478 6075400 ~ 6081684 (+)
CI01000013_06405275_06423872 SLC6A15 coding downstream 15509 6404196 ~ 6424521 (+)
CI01000013_06440333_06446814 SSPN coding downstream 50939 6439626 ~ 6447195 (+)
CI01000013_06548714_06565582 PLEKHG7 coding downstream 159282 6547969 ~ 6566123 (+)
CI01000013_06635640_06638681 NA coding downstream 246663 6635350 ~ 6639000 (+)
CI01000013_06705612_06716925 ARNTL2 coding downstream 316925 6705612 ~ 6717106 (+)
G81754 NA non-coding upstream 35720 6351905 ~ 6352119 (+)
G81738 NA non-coding upstream 56195 6331040 ~ 6331644 (+)
G81672 NA non-coding upstream 302944 6083474 ~ 6084895 (+)
G81765 NA non-coding downstream 59876 6448563 ~ 6449178 (+)
G81789 NA non-coding downstream 62772 6451459 ~ 6451669 (+)
G81790 NA non-coding downstream 63038 6451725 ~ 6451932 (+)
G81843 NA non-coding downstream 226831 6615518 ~ 6644918 (+)
G81864 NA non-coding downstream 265253 6653940 ~ 6654270 (+)
CI01000013_06050285_06059640 NA other upstream 328343 6049864 ~ 6060269 (+)
G80845 NA other upstream 1551607 4835078 ~ 4836232 (+)
CI01000013_04051081_04064651 NA other upstream 2322010 4050837 ~ 4065829 (+)
G80062 NA other upstream 2803055 3584008 ~ 3584784 (+)
G81994 NA other downstream 947258 7335945 ~ 7338239 (+)
G82168 NA other downstream 1639651 8028338 ~ 8041343 (+)
G82581 NA other downstream 2940642 9329329 ~ 9334948 (+)
G84005 NA other downstream 3212924 9601611 ~ 9602235 (+)
G84194 NA other downstream 3641921 10030608 ~ 10036953 (+)

Expression


Co-expression Network