G303228 (chd1)


Basic Information

Item Value
gene id G303228
gene name chd1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 90240 ~ 92620 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU417572
GGCCTTATACCATAAGTAAATATACACTGAAGTGTATTAGATTATTTAGGTAATAAAGGTTATTTGCCTGAGGTCTTCTCTGGTCCACAGGGGTTTTCCCTCAGTGTTTTAACACAGCCGTTGTGCACAGTTTCTGCCAGTCGCCTCAAATCATGCTCCGATTTATCCACCAACTCAGCATCTCGGGCAATAGCATCCAATCTTTCCAAAGGACCCCCAAACTTCTTGTAGCTCTTAATGaatcTTCGTATTTCAGCATCACTAAAGCCCTTAATATTCTCCCTAGGAATCGTTCGAGGTCTGCCTCTCTTCTTAGGCCGTTTTCGATCTGACGCGGAGTCGCTGTCTGAGCCAGAGTATCTTCTGTTCCGACTCCGTCTGCCCTCGTTACCGTTGAAGCTTATCTGTTTGGCACAGTTCCTCATGCGGGGAAGCAGGTAGATCTCTGCCAGCTCCTtctgcctctcctcctcctccatcctccGCCGCTGCTCCTCTGGGATAATGTCGTCCCAGTTCCTCTGGTTGCCATCTGCGTCCATGTCAATCTCCTCCTCTTCCATCATAGTGAAGTTTGCCACCTTAAACTGTGAGAGAAGTTCCTCTCCTACAGTAGACGGGCCAGGGTCATTTTCTCTGGTTTCTGCTCTCTTCAGAATTTCATCAATATCCATTTCCTGAGGCTCCTGTTCCTCTCCCTCTGGCTCCTTGAAGAGTTCTTCAGACCAAACTTTAGAATAGCCGACAGCTCCTCCTTGTTGAAAGGGGTGGAACTGCTGGAGGGGGCAGCACCAGTATGGAGGACAGTCTTTCCTGTCGTGTCCATCCTCTGAATCACAAGGTGGTCCAGCACCATCTTTTTCTTGGCTCTTTCAAT

Function

symbol description
chd1 Predicted to enable several functions, including ATP binding activity; DNA binding activity; and DNA helicase activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in castration-resistant prostate carcinoma and prostate cancer. Orthologous to human CHD1 (chromodomain helicase DNA binding protein 1).

NR:

description
PREDICTED: uncharacterized protein LOC106587709, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417572 True 877 lncRNA 0.49 7 90240 92620

Neighbor

gene id symbol gene type direction distance location
reep5 reep5,LOC107740782,LOC107715872,LOC108246451 coding upstream 9049 71276 ~ 81191 (+)
LOC103030803 aph1a,LOC108427283,LOC100304952,LOC105021718,LOC107670051 coding upstream 65592 7635 ~ 24648 (+)
pam pam,LOC107577007,LOC107737006 coding downstream 95022 187642 ~ 309508 (+)
ppip5k2 ppip5k2 coding downstream 223362 315982 ~ 359784 (+)
cunh5orf30 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 coding downstream 274327 366947 ~ 372699 (+)
LOC103024265 NA coding downstream 289435 382055 ~ 383879 (+)
LOC103024567 LOC108427294,LOC108413448 coding downstream 292883 385503 ~ 389270 (+)
G303226 chd1 non-coding upstream 2362 85897 ~ 87878 (+)
G303221 NA non-coding upstream 28927 59902 ~ 61313 (+)
G303218 NA non-coding upstream 39200 30569 ~ 51040 (+)
G303305 NA non-coding downstream 269325 361945 ~ 363425 (+)
G303340 NA non-coding downstream 347802 440422 ~ 446559 (+)
G303341 NA non-coding downstream 351239 443859 ~ 445869 (+)
LOC111191252 NA non-coding downstream 458750 551370 ~ 567446 (+)
G303418 NA non-coding downstream 699732 792352 ~ 795312 (+)
G303307 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 other downstream 273373 365993 ~ 383873 (+)
LOC111191247 NA other downstream 713470 806090 ~ 806546 (+)

Expression


Co-expression Network