G303413


Basic Information

Item Value
gene id G303413
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172836.1
NCBI id APWO02000054.1
chromosome length 895725
location 805713 ~ 809762 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU417843
CAGGAGTTTAAAGCCTCTCTGTGATTTATGGGGAACAGTTATTCATATTGGGTCAAATAATGTAGTGTTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTACTGTGGTTCCGCTTTACTCTGTTTTCATTAAAAGCCCCTCAGTGTTAAAACAACGGCACTAAAACAGGCGGAGCGGTGGGCCTCCAGCACCAGTAGTGATTACCCTGCCGGGTTAGAGGAGAGTAGCGCGGAGGAGCTCTTTTAGTCCCGAAGCTGCAACTGGATTTTATAAAGATAAGAGAAAAGAATGCTTTCGCCGTGGATTTGACATGAAAAGGGAAGCTGGGGCAGAAGAACGAGGAGCTGTACTCTCTGGGTGAAGGAGGATTTGGCGCAGTGTTTGCAGGCTATTGACCTGAGGACCTACTGCCTG
>TU417844
CAGGAGTTTAAAGCCTCTCTGTGATTTATGGGGAACAGTTATTCATATTGGGTCAAATAATGTAGTGTTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTACTGTGGTTCCGCTTTACTCTGTTTTCATTAAAAGCCCCTCAGTGTTAAAACAACGGCACTAAAACAGGCGGAGCGGTGGGCCTCCAGCACCAGTAGTGATTACCCTGCCGGGTTAGAGGAGAGTAGCGCGGAGGAGCTCTTTTAGTCCCGGGAAGCTGGGGCAGAAGAACGAGGAGCTGTACTCTCTGGGTGAAGGAGGATTTGGCGCAGTGTTTGCAGGCTATTGACCTGAGGACCTACTGCCTG
>TU417845
TAATTTTCGCGcgtgcgcagtcggccgctaattttcgcgcgtgcgcagtcggccgctaaatttcGCGCATGCGCATaccacattatattatatttaattggtCTTGTGGGAACACACCGCTAGGTATACATTAACTAAAAGTGTTGCTCCCTTCTGGCTCGGGATGCGGCTGTGCACTTGGGCGCGTGCAATTCCACAGAAGCTGCAACTGGATTTTATAAAGATAAGAGAAAAGAATGCTTTCGCCGTGGATTTGACATGAAAAGGGACAACTTGAAGAACCTCCCCCTGGAAGTGGCACTCATGCACATGGCTGGTGTTGACTCATTCATTGCTGGAGGGACCTCAAGCTTCTCCATAGAGCTGCTGGACTGGTCTAAGCTTCAGGACGAGGTCGTGTCGGTGTGGGACCTATGCTCCATATGCTTCTGCTTGGACCTTTTCGATTACATCCAGGCCAGCGGATGCCTGCAGGAGGAAGAA
>TU417846
TAATTTTCGCGcgtgcgcagtcggccgctaattttcgcgcgtgcgcagtcggccgctaaatttcGCGCATGCGCATaccacattatattatatttaattggtCTTGTGGGAACACACCGCTAGGTATACATTAACTAAAAGTGTTGCTCCCTTCTGGCTCGGGATGCGGCTGTGCACTTGGGCGCGTGCAATTCCACAGAAGCTGCAACTGGATTTTATAAAGATAAGAGAAAAGAATGCTTTCGCCGTGGATTTGACATGAAAAGGGAAGCTGGGGCAGAAGAACGAGGAGCTGTACTCTCTGGGTGAAGGAGGATTTGGCGCAGTGTTTGCAGGCTATTGACCTGAGGACCTACTGCCTG
>TU417847
TAATTTTCGCGcgtgcgcagtcggccgctaattttcgcgcgtgcgcagtcggccgctaaatttcGCGCATGCGCATaccacattatattatatttaattggtCTTGTGGGAACACACCGCTAGGTATACATTAACTAAAAGTGTTGCTCCCTTCTGGCTCGGGATGCGGCTGTGCACTTGGGCGCGTGCAATTCCACAGAAGCTGCAACTGGATTTTATAAAGATAAGAGAAAAGAATGCTTTCGCCGTGGATTTGACATGAAAAGGGAAGCTGGGGCAGAAGAACGAGGAGCTGTACTCTCTGGGTGAAGGAGGATTTGGCGCAGTGTTTGCAGGCTATTGACCTGAGGACCTACTGCCTGGACAACTTGAAGAACCTCCCCCTGGAAGTGGCACTCATGCACATGGCTGGTGTTGACTCATTCATTGCTGGAGGGACCTCAAGCTTCTCCATAGAGCTGCTGGACTGGTCTAAGCTTCAGGACGAGGTCGTGTCGGTGTGGGACCTATGCTCCATATGCTTCTGCTTGGACCTTTTCGATTACATCCAGGCCAGCGGATGCCTGCAGGAGGAAGAA
>TU417849
CAGGAGTTTAAAGCCTCTCTGTGATTTATGGGGAACAGTTATTCATATTGGGTCAAATAATGTAGTGTTTCTTCACTCTGGTGCTGAAGGTCCGCTGCGCTGCTCTTTACTGTGGTTCCGCTTTACTCTGTTTTCATTAAAAGCCCCTCAGTGTTAAAACAACGGCACTAAAACAGGCGGAGCGGTGGGCCTCCAGCACCAGTAGTGATTACCCTGCCGGGTTAGAGGAGAGTAGCGCGGAGGAGCTCTTTTAGTCCCGAAGCTGCAACTGGATTTTATAAAGATAAGAGAAAAGAATGCTTTCGCCGTGGATTTGACATGAAAAGCTGGGGCAGAAGAACGAGGAGCTGTACTCTCTGGGTGAAGGAGGATTTGGCGCAGTGTTTGCAGGCTATTGACCTGAGGACCTACTGCCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU417843 False 422 lncRNA 0.49 3 805713 808564
TU417844 False 355 lncRNA 0.51 2 805713 808564
TU417845 False 483 lncRNA 0.50 3 807103 809762
TU417846 False 362 lncRNA 0.50 3 807103 808564
TU417847 True 578 lncRNA 0.51 4 807103 809762
TU417849 False 417 lncRNA 0.48 3 805713 808564

Neighbor

gene id symbol gene type direction distance location
syk syk coding upstream 257542 432587 ~ 548171 (+)
LOC103031748 NA coding upstream 400962 402467 ~ 404751 (+)
LOC103025635 LOC103025635 coding upstream 406867 395959 ~ 398846 (+)
LOC103024567 LOC108427294,LOC108413448 coding upstream 416443 385503 ~ 389270 (+)
LOC103024265 NA coding upstream 421834 382055 ~ 383879 (+)
trnar-ccu_63 NA coding downstream 83703 893465 ~ 893537 (+)
trnam-cau_91 NA coding downstream 83998 893760 ~ 893831 (+)
trnam-cau_92 NA coding downstream 84200 893962 ~ 894033 (+)
trnam-cau_93 NA coding downstream 84415 894177 ~ 894248 (+)
G303418 NA non-coding upstream 10401 792352 ~ 795312 (+)
LOC111191252 NA non-coding upstream 238267 551370 ~ 567446 (+)
G303340 NA non-coding upstream 359154 440422 ~ 446559 (+)
G303341 NA non-coding upstream 359844 443859 ~ 445869 (+)
G303305 NA non-coding upstream 442288 361945 ~ 363425 (+)
G303421 NA non-coding downstream 3117 812879 ~ 813722 (+)
G303307 cunh5orf30,zgc:194281,c16h5orf30,LOC107564120,LOC107740794,LOC107670048,LOC107665462,LOC107715868 other upstream 421840 365993 ~ 383873 (+)

Expression


Co-expression Network