G323902 (lcp1,LOC108439517,LOC107732195,LOC107660271,LOC107740717,LOC107685450)


Basic Information

Item Value
gene id G323902
gene name lcp1,LOC108439517,LOC107732195,LOC107660271,LOC107740717,LOC107685450
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 123616 ~ 127776 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU446022
tcttattgacTTTAtgtaaatcagagaaacatacATGTCTAATCtctgtattaataatgtattgcaTCCTTTTTTCAGCTTCTTCATTTTAAAACCTCTACTTTCCGCTCTGTTTTCCCTCTAAGCTCATGTTAGCACTGAACAAAGCTACTGATAGAGATCACAGTATTCAGAGGAAAAGGAAAATATAATGAAGGATAGAACACTGTCCGCTGCAGGCCTGCGATTTCCAGAGCCGTCTGGTTTCTGATGGACGTGAAGAAACGTGTAGAACATGTAGAAATGAGAGAATAAAACTCGGGATCTTCTCTGGtggcagcagcagaagctcctcGGCTCTAAACTCTCTTCAGGCCTCGAGCCATCAGGCAGGCGAACACCGTCATCACCATCTTGGGTTTAACCTCCACCAGATCCTCCGGCAGAGCGTAAACCCGAGCGCCGATCTTCCTCGCCATGGAGATCGCGTACtttatTTTTGATTGTTTTGATGAATTCGCTGTGGCTTTGTTTCTATAAGCTTCTGCagcgtcacaagatttattttaatccagtgttgcattaatttattaatttgtcaccaagatcttgcagcagaattgatgatggtagagtctgaccaaccgctgcacacAAGTCACAATAACACttacaaagcaaacaaaaagaagacaacgcaactacattaagaaaacaCAGCATTAAAGGGAAAGTAAATACATTTGCCACACCGGAAATGCTCCCGACCACTAGAGGGCGCCGTTTAGCTGTTGGCGTTGTACCAAAAACCTGGCCAGAAGCTAGCTTTGCTGTGCTGCCTGTGCCCAGACAGGGAGACAGGTGAGCGTAGGACAGAAGTTTGTTTACAGGCGTGATTCTAGTTTAACTATCTAGTAGCTATTTGCTACTGAAAAACCTCCACAGCCCACACCAAAACGCTAACCATTGGCTAGAATTCTGCCGTGAACAAACTTCTGTCCTATGCTCACCTGTCTCCCTGTCTAGGCACAGGCAGCACA
>TU446024
CTGAAATGCAGCGtcttctttttgtttgctttgtaaatgtttttttgtgatgtgtCTTTCTGGGACACTGTAAAGGCTGGTTATGGGAACGTACTTGGCGTTGTTGAGTTTCTCTTCGTCTGAAAGATCTTCTGCTTTAATCAGATCGTAGCGGATTGATCCGGGCTGGATGGCATCAATAAGGTCCAGAACCGGCATGCTGCTGCTAATGGATCCATCTTGAAGCCTGAGATGGTTTTTTTGTCAGCTTGTTTCAGTGTGTCGTTCACCCAGCCCACGATGGTGTCATCGTTGACCTTCTGCCCGTCCCCGAGGTCCTCCAGGATGTTCAGAGTGTACCTCCTCATGAGCTGCCAGAGCAGGGCGAGGGTGAGAGTACGGTTCCCCTCGTTCAGGTCCTGCCCAGCGATTCCAACCAGAGAGAACTTGGCCTCCTTCTTTCCCAGCTCCACCGCGTAGTTACAGTTCTCCAGCTTCTTCATATTACTGCCGAGTTTGGGATAGGGGGGCTTGTTGACTTTGTCCCAGTCTACAGGAACCTTGATCTTCTCATACAGCTGGAAGATGATCAGAGCATCAGCCAGATCcCCATAGAGGTGATTTACACGAGGGTTCACACCCAGAGAGTTCATCCAGTTACGGAAGGTGCGCTCCTCTCTGGTCTCACCTCGATGGAGCTCCAGTCGATGTCCTGGTTCTCTGGTTTCTTCAGAGCCGGGTATTTGTTGAAGAGATTGGCCACGAAGGCGAGGTTGAGCTTGGGGTTTCCGCGGACCACGTCAGGGGGCATAACGAACTGCCTGCAGCCGAGCCGATCGGCCTGATCCAGCATGCACTCCGCTCTCTTCAGATCCTCCTTCTCCTGCAGGACGAGAAGAACCACACAAAACATTCATACAATTATTATAAACACGGGATTATAATGCCTCAGCAATACTGG

Function

symbol description
lcp1 Predicted to enable actin filament binding activity. Predicted to be involved in actin filament bundle assembly and actin filament network formation. Located in cytoplasm. Is expressed in several structures, including eye; hematopoietic cell; hematopoietic system; mesoderm; and renal system. Orthologous to human LCP1 (lymphocyte cytosolic protein 1).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446022 True 1019 lncRNA 0.44 2 126615 127776
TU446024 False 940 lncRNA 0.51 6 123616 126477

Neighbor

gene id symbol gene type direction distance location
LOC103042938 NA coding downstream 23937 97566 ~ 99679 (-)
LOC111191691 NA coding downstream 35592 74756 ~ 88024 (-)
LOC103028530 NA coding downstream 50126 63043 ~ 73490 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027,LOC107601074,LOC107675337 coding downstream 62532 55893 ~ 61084 (-)
cnot11 cnot11,LOC106582250 coding upstream 1061 128837 ~ 135027 (-)
trnal-caa_87 NA coding upstream 7566 135342 ~ 135451 (-)
tbc1d8 tbc1d8 coding upstream 14133 141909 ~ 167436 (-)
edar edar,LOC107566566 coding upstream 89577 217353 ~ 271612 (-)
LOC111191692 NA non-coding downstream 69025 52894 ~ 54591 (-)
G323836 NA non-coding downstream 95298 28020 ~ 28318 (-)
G323904 rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715 non-coding upstream 8224 136000 ~ 139374 (-)
G323906 NA non-coding upstream 12556 140332 ~ 147574 (-)
G323909 NA non-coding upstream 36133 163909 ~ 164575 (-)
G323911 NA non-coding upstream 45165 172941 ~ 196305 (-)
G323917 NA non-coding upstream 67625 195401 ~ 210415 (-)
lrrc63 NA other downstream 11579 103958 ~ 112037 (-)
nms nms other upstream 47198 174974 ~ 179325 (-)

Expression


Co-expression Network