G323904 (rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715)


Basic Information

Item Value
gene id G323904
gene name rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 136000 ~ 139374 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU446029
TGAAttcttttatacatttattccaACATCCATGAAAGAACATTAGTTTTCATCCACATTGACAGTCTGGAGACCTTTGTATGTGGTGACTGGAACGTACGTGACGAGGGTGTACAGTTTGTTGGGAGAATCTTCGTCTTCATTACGTTTCCTGGAGAGACGCACGCGCATGCGGTACGGGACGTTCCTGACTCCTTTGGCCCAAACTGCCTTGTTCAGACGTGTGTCGATGCGGACGTCTGGGGTGCCCATCTCCTTCATGGCGAACTTTCTGATTTCTTTAATAGCACGAGGTGCCCTCTTCTTGAAAGATGCCATGAATGCGTTTGTGGACGTTGATGGTGTACTCCCTGGTCACCACCTCGTTGATGGCAGAACGccccttctttttctctcctccttTCTTTAGTGGTGCCATCTGTAACAcatgaatcatttataaatattaaataccgTGCACTGGTTCAGCTTGTACATCAGCCACCTTATTATACTCAATATTCTCCCACTATGTTTAATAACGCAGCTTCTTTTTATGACCCATTGACTAAATGAACTTGTTTAGCTGCATTATCAGGATGCTCTTCAGATATGCAATATTCACTTAAACGAAGACTAAAGAAATGCACTACTAACCCCAATTATACTtaactataaaaa
>TU446031
TGAAttcttttatacatttattccaACATCCATGAAAGAACATTAGTTTTCATCCACATTGACAGTCTGGAGACCTTTGTATGTGGTGACTGGAACGTACGTGACGAGGGTGTACAGTTTGTTGGGAGAATCTTCGTCTTCATTACGTTTCCTGGAGAGACGCACGCGCATGCGGTACGGGACGTTCCTGACTCCTTTGGCCCAAACTGCCTTGTTCAGACGTGTGTCGATGCGGACGTCTGGGGTGCCCATCTCCTTCATGGCGAACTTTCTGATTTCTTTAATAGCACGAGGTGCCCTCTTCTTGAAAGAGATGCCATGAATGCGTTTGTGGACGTTGATGGTGTACTCCCTGGTCACCACCTCGTTGATGGCAGAACGccccttctttttctctcctccttTCTTTAGTGGTGCCATTGTTCAGGACGAGCCTCGGAAAGGAAGGAGAACGGGCTTCTGGGTAATACAAACT
>TU446033
TGAAttcttttatacatttattccaACATCCATGAAAGAACATTAGTTTTCATCCACATTGACAGTCTGGAGACCTGCAGAGACACAACAGATAATAGTAGAGATTAGTTATGCTGGATTAACACATGAATACTTTTATTCTAGGCATAGAGGTCACTCATCTGTTCTAGTTTGATTATTTACTCAGTATCTCACAGCATGAAGCGGACAATATTCTAGATAATGCATAAACGTAATGGTCATGTTGCACGCCACTACCCAAAACAGTTTGATGAAGCAGATTAACACAGGATTGTGCTGTTGGTCTTCACTTTAACATCACCTTTAAAGTCCAAGCTCTACACTGGAAATGTGACCTAGTGGTGTAAACCATTTTCACAAACACAGCTAGATTAGCTAGGTTATACTTGATTCAGACTACTGAACACAAACCACTGTGaataaatcaaaaacaaaactgtacgCCCAACTAAAACTAGGTTCTCAATTACTAAAAGGAAGCACAACCTCTGCTGCACAAACTGAGAAGTCAATAGTGCAGCTCTCACAAAAGCTTCATGTATTAGTCAGTCAACACTACCATGTGGCAAGACCAAATCACCTTCACATATAGGTTATCAATCTCATTTacagagggaaaaaaatgtGGTTTTAGCTTTAATGCAATCTAAAATGTCCAGCAGGTTGCACACTACAGCTAATCTAATTTATCAACAGTACTAATCTTAAGAGCCTGAGACTTGTGTCTTTTCCACACAATGCTATATCCACACAGTCTGAATAAACAAACAGCTGAAAAAAACATCTGCATTAGTGAGTTCTGGAGATTTAACAAAAATTAATCTTAAATCCCTCCACAAAAAGCATGGCGTTATCTCCTGCTGAAATCAAACATGCATCAAACCTCACCAGTAAAAACTGCCTTACAGCAGGACTTCTACTTTTATCTAGATAACTTAATCCTCTTCAATAAAAGTGATTTAATTAACGACTCCTCAACTTTTGGTGCACACTTTGGCTGAATCTCACCTTTGTATGTGGTGACTGGAACGTACGTGACGAGGGTGTACAGTTTGTTGGGAGAATCTTCGTCTTCATTACGTTTCCTGGAGAGACGCACGCGCATGCGGTACGGGACGTTCCTGAAAGGACAAACAAAATCACTGAATTATACTGAGAATAGCATTAACAAAATTACACCACACTCCTAccagtgttttatttatcaCCATTCTGGAATTTCCCAGAATTTGGGCTGATTACATTTaagaaaggtgttttttttttgtgacagacTACAGGAATATGAGCAGATCAAAGACATTACagcaataattaaatatttctcCAATACTGAATTGGTGGTGTAGACAGGGAACCAGGGATCTCCAAGCATTAGCAAAATCACACTCTGACAATAAGTCCTgctgttttattcattattgcTGCAAGCTTAAATGCAAGGaatataaatgttaatgttCTACCGAGTGTCTAGTCTCtaatttataaatatgcatatcAGCATAAAAACACATGTAACATCATACCAGCATTgaccagaattcccacatcgtgcatctctatttatttgttgttcTACAGCTTCCAACCAGAGGACAGATTCCCTGTTTTCATTCTGGTTTCTCTGGAGGCTTCTTCATGAGTTAAAGGAACTGTCCTGACATAGTCaccaatttaccaaacaaaAACTGGACTCAGTTCAACACTTTCAACCTCTTTTGGCACTGGTAGAGCAACACGCTGAACACAATCTATAACAGTTAACACACAGCTGTTTTCCCCACCCCTGATCTCTATCCCaattttgattatttaataGGAGGTGGTTACCTGACTCCTTTGGCCCAAACTGCCTTGTTCAGACGTGTGTCGATGCGGACGTCTGGGGTGCCCATCTCCTTCATGGCGAACTTTCTGATTTCTTTAATAGCACGAGGTGCCCTCTTCTTGAAAGAGATGCCATGAATGCGTTTGTGGACGTTGATGGTGTACTCCCTGGTCACCACCTCGTTGATGGCAGAACGccccttctttttctctcctccttTCTTTAGTGGTGCCATCTGTAACAcatgaatcatttataaatattaaataccgTGCACTGGTTCAGCTTGTACATCAGCCACCTTATTATACTCAATATTCTCCCACTATGTTTAATAACGCAGCTTCTTTTTATGACCCATTGACTAAATGAACTTGTTTAGCTGCATTATCAGGATGCTCTTCAGATATGCAATATTCACTTAAACGAAGACTAAAGAAATGCACTACTAACCCCAATTATACTtaactataaaaa

Function

symbol description
rpl31 Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL31 (ribosomal protein L31).

NR:

description
60S ribosomal protein L31

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446029 False 660 lncRNA 0.42 4 136873 139374
TU446031 False 475 lncRNA 0.48 5 136000 139374
TU446033 True 2329 lncRNA 0.39 2 136873 139374

Neighbor

gene id symbol gene type direction distance location
trnal-caa_87 NA coding downstream 549 135342 ~ 135451 (-)
cnot11 cnot11,LOC106582250 coding downstream 973 128837 ~ 135027 (-)
LOC103042938 NA coding downstream 36321 97566 ~ 99679 (-)
LOC111191691 NA coding downstream 47976 74756 ~ 88024 (-)
LOC103028530 NA coding downstream 62510 63043 ~ 73490 (-)
tbc1d8 tbc1d8 coding upstream 2535 141909 ~ 167436 (-)
edar edar,LOC107566566 coding upstream 77979 217353 ~ 271612 (-)
G323902 lcp1,LOC108439517,LOC107732195,LOC107660271,LOC107740717,LOC107685450 non-coding downstream 8224 123616 ~ 127776 (-)
LOC111191692 NA non-coding downstream 81409 52894 ~ 54591 (-)
G323836 NA non-coding downstream 107682 28020 ~ 28318 (-)
G323906 NA non-coding upstream 958 140332 ~ 147574 (-)
G323909 NA non-coding upstream 24535 163909 ~ 164575 (-)
G323911 NA non-coding upstream 33567 172941 ~ 196305 (-)
G323917 NA non-coding upstream 56027 195401 ~ 210415 (-)
lrrc63 NA other downstream 23963 103958 ~ 112037 (-)
nms nms other upstream 35600 174974 ~ 179325 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location