nms (nms)


Basic Information

Item Value
gene id nms
gene name nms
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 174974 ~ 179325 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU446046
CCGTGCATTTTTATGAGGGTGAGTGCGTGGGTTCCGGGCGCGCGCCGCTCTGAGGAGAGATGAGCTTCAGCGTGGCTCAGGTGAACATCCTCTACCTGCTGCTCTGCGGCTTCTGCGGGGCTCGCGACACCGCCGAAAGTTATCCATTGACAGACTGTGAAGATGATGGAGATTATATGCAGGGTTCTGCTGTACAGAGCACTTTGTGTGGACTTGTGTGGCAAGACCAGAACAAGGAGCAGATCCAGAATGTTTTCAAACGgTTTTTGTTTCATTACTCCAAGGCACAGAACTCAGTCGGCTCAGTCGAAAGAGAGTCTCACTCTGTCCACCCACTGATGCGCCTGTCCCCGAAGTTCGTCCAGCGCAGGAGGAAACAGCATGTGTCCTCAAGAAGCTGAAGTCATGTGGCCGTTCCAATAGACTAGTTCGGGATGTGCTCTGCTCTTTAATTGGATGCTCAGGGCAGCTGTAACACCTGGAGTCGGACAGACTGACCGGAATGAtctgatgttttaaatgttttggacTGAATTTCTCACtcaattctgtaaataaatataatatcatGTAAGAGAGTCGTGTGTCTGATATTAGATTTG
>XM_022667270.1
TCTGAGGAGAGATGAGCTTCAGCGTGGCTCAGGTGAACATCCTCTACCTGCTGCTCTGCGGCTTCTGCGGGGCTCGCGACACCGCCGAAAGTTATCCATTGACAGACTGTGAAGATGATGGAGATTATATGCAGGGTTCTGCTGTACAGAGCACTTTGTGTGGACTTGTGTGGCAAGACCAGAACAAGGAGCAGATCCAGAATGTTTTCAAACGgTTTTTGTTTCATTACTCCAAGGCACAGAACTCAGTCGGCTCAGTCGAAAGAGAGTCTCACTCTGTCCACCCACTGATGCGCCTGTCCCCGAAGTTCGTCCAGCGCAGGAGGAAACAGCATGTGTCCTCAAAGCTGAAGTCATGTGGCCGTTCCAATAGACTAGTTCGGGATGTGCTCTGCTCTTTAATTGGATGCTCAGGGCAGCTGTAACACCTGGAGTCGGACAGACTGACCGGAATGAtctgatgttttaaatgttttggacTGAATTTCTCACtcaattctgtaaataaatataatatcatGTAAGAGA

Function

symbol description
nms Is expressed in several structures, including diencephalon; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human NMS (neuromedin S).

NR:

description
PREDICTED: neuromedin-S isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU446046 True 602 TUCP 0.49 8 174974 179325
XM_022667270.1 False 528 mRNA 0.48 8 174998 179277

Neighbor

gene id symbol gene type direction distance location
tbc1d8 tbc1d8 coding downstream 7538 141909 ~ 167436 (-)
trnal-caa_87 NA coding downstream 39523 135342 ~ 135451 (-)
cnot11 cnot11,LOC106582250 coding downstream 39947 128837 ~ 135027 (-)
LOC103042938 NA coding downstream 75295 97566 ~ 99679 (-)
LOC111191691 NA coding downstream 86950 74756 ~ 88024 (-)
edar edar,LOC107566566 coding upstream 38028 217353 ~ 271612 (-)
G323909 NA non-coding downstream 10399 163909 ~ 164575 (-)
G323906 NA non-coding downstream 27400 140332 ~ 147574 (-)
G323904 rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715 non-coding downstream 35600 136000 ~ 139374 (-)
G323902 lcp1,LOC108439517,LOC107732195,LOC107660271,LOC107740717,LOC107685450 non-coding downstream 47198 123616 ~ 127776 (-)
LOC111191692 NA non-coding downstream 120383 52894 ~ 54591 (-)
G323917 NA non-coding upstream 16076 195401 ~ 210415 (-)
lrrc63 NA other downstream 62937 103958 ~ 112037 (-)

Expression


Co-expression Network