cnot11 (cnot11,LOC106582250)


Basic Information

Item Value
gene id cnot11
gene name cnot11,LOC106582250
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 128837 ~ 135027 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235500.3
cttGGTTCAGACTCCGGGTCAGTAGGCGGCGGTACTGCAGCTCCAGCCGGTCTGTGTCGCGCGGTGACCCGGAGAGAGAAGAAGACCCGTCCCCGGGTTTGGAAGTGTTGGgagttattttgttgtttatggacagttttttactctttttgagagatttatctttatttctgatgtttattcctgttttagttttataaatGAAGATCAGAGAGATCTCAGAAAGCTCCAGGTCTTAATGAACCCCGGGTTTAAGTGGTGATCGATTTGCCAGAGTGAAATCATGACCCTCGCCCCCAAAGAGCTGTCCAACCTGCTGGGCATCAtctcggaggaggcgtgtggaAACACCTTCGAGAGCCTCTCTAATGCCTTCCATCACTGCTTCGGGAAGGCTGAGCACTTCCGGGTCGGCTCGGTTCTGgtgatgctgctccagcagccaGATCTGCTGCCCAGTTCTCCTCAGCGTCTCACTGCTCTGTACCTGCTGTGGGAGATGTACCGCACCGAGCCGCTCGCTGCGAACCCGTTTGCTGCGGTCTTTGCTCATCTTCTTAATCCATCTGTTTCTGGTGAGGAGCAGGAGAAACCTCTGTCAGgtttcCTCCCACCCATCACACTGCCGGAGAAGTTTTTCCTGTCTCAGCTGATGCTCGCTCCTCCCCGGGAACTGTTTAAGAAGACGCCGCGGCAGGTTTCCTGCATGGACGTGGGCACGGCACCTCAGGCCATCGACATTAGCGGCCTGCAGCTCGCTCTCGCTGAGCGCCAGTCTGAGCTTCCTACTCAGAGTAAAGCCAGTTTTCCCAGCCTGCTCAGCGACCCTGACCCCGACTCCTCCAACTCTGGCTTTGACAGCTCTGTGGCCAATCAGATTATAGAGTCTCTGGTCACTGGACCACGCCCTCCACTGGAGAGTCACTTTCGTCCCGAGTTCATCCGGCCGGCTCCTCCGCTGCTGGTGTGCGAGGACGAGCTGGCGTGGCTGAACCCGTGCGAGCCGGAGCACCGCGTGCAGTGGGACCGATCCATGTGTGTGCGGAACGGCACGGGCGTGGAGATCAAGCGCATCATGGCCAAAGCTTTTAAAAGCCCTCTGTCTGCAGCACAGCAAACGCAGctGCTGGGTGAACTGGAGAAGGACCCGAAGCTGGTGTACCACATCGGGCTAACTCCGGCTAAACTGCCTGATCTGGTGGAGAACAATCCTCTGGTTGCTATTGAGATGCTGCTGAAGCTCATGTCCTCCAGTCAGATCACAGAGTATTTCTCAGTTCTGGTCAACATGGACATGTCCCTACACTCCATGGAGGTGGTCAACAGGTTAACCACAGCAGTGGATCTCCCACCTGAGTTCATCCACCTGTACATCTCCAACTGCATCTCCACCTGTGAGCAGATCAAGGACAAGTACATGCAGaatcGTCTGGTgcggttggtgtgtgtgttcctgcagTCTCTGATCAGGAATAAGATCATTAATGTTCAGGATCTGTTTATCGAGGTTCAGGCGTTCTGTATCGAGTTCAGTCGGATCCGAGAAGCTGCCGGACTCTTCCGTCTCCTCAAAACCCTGGATAACGGAGAGACCCCCGCAGAAACCAAACCCACCAAATAGTGACTCTTCCAGATTTACAGACTCTCGCTGAAGCAGCGGCGCTCTGGACCTGAATCTTTCAGTGGCcacatgtttaatattatctgTGTTAAATTTTTGGGTCCTTCCTGcggtttttatgtttttgtttgtttgagaaGAGCAGCTGAAGATGTAGTAAAGACCGGACCAGCAGAGATGATCTAAACTCACTCTGAACAGACTTTAAAAGCTGTGACTGTATGATCCTCTGTCTTCTGAAAGATCTGGACTGATTAACCTCTTCATTTCAGGAAACTGATTTTCCATTTAAACCTGCATAAAGAATTATGTTCCAGACAAAACATAAAGATGTCTCAGTTTTTCCCCTCATACTCTGAACTCTGTTTCTCTCAGAGCGTTTCTGAAGGTAATAGACCCTTTTCTTAAAGGGATGTTATATCTTTATTATAAAAGCATCCACCTGCAATGACCTCTGTCTaaaattgaataataaaaaagaaaacagaatttAAAGTGAATGCTGTTTTAAATAAGTGTTGAATAAATTTTAAACACAA

Function

symbol description
cnot11 Predicted to be involved in mRNA catabolic process and negative regulation of translation. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT11 (CCR4-NOT transcription complex subunit 11).

NR:

description
CCR4-NOT transcription complex subunit 11-like isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006417 regulation of translation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0005634 nucleus cellular_component
GO:0030014 CCR4-NOT complex cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235500.3 True 2160 mRNA 0.50 8 128837 135027

Neighbor

gene id symbol gene type direction distance location
LOC103042938 NA coding downstream 29158 97566 ~ 99679 (-)
LOC111191691 NA coding downstream 40813 74756 ~ 88024 (-)
LOC103028530 NA coding downstream 55347 63043 ~ 73490 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027,LOC107601074,LOC107675337 coding downstream 67753 55893 ~ 61084 (-)
trnal-caa_87 NA coding upstream 315 135342 ~ 135451 (-)
tbc1d8 tbc1d8 coding upstream 6882 141909 ~ 167436 (-)
edar edar,LOC107566566 coding upstream 82326 217353 ~ 271612 (-)
G323902 lcp1,LOC108439517,LOC107732195,LOC107660271,LOC107740717,LOC107685450 non-coding downstream 1061 123616 ~ 127776 (-)
LOC111191692 NA non-coding downstream 74246 52894 ~ 54591 (-)
G323836 NA non-coding downstream 100519 28020 ~ 28318 (-)
G323904 rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715 non-coding upstream 973 136000 ~ 139374 (-)
G323906 NA non-coding upstream 5305 140332 ~ 147574 (-)
G323909 NA non-coding upstream 28882 163909 ~ 164575 (-)
G323911 NA non-coding upstream 37914 172941 ~ 196305 (-)
G323917 NA non-coding upstream 60374 195401 ~ 210415 (-)
lrrc63 NA other downstream 16800 103958 ~ 112037 (-)
nms nms other upstream 39947 174974 ~ 179325 (-)

Expression


Co-expression Network