med4 (med4,LOC107673119,LOC107709409,LOC107724027,LOC107601074,LOC107675337)


Basic Information

Item Value
gene id med4
gene name med4,LOC107673119,LOC107709409,LOC107724027,LOC107601074,LOC107675337
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 55893 ~ 61084 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235508.3
ctctctctcagtgtgagGGGAAGTGAGCGCGATGGCGGCGGGGGAGAGGAGCACTAAGGAGAAGCTGCTCTCTGCGCTCAGTGATATGGAGGTTTTATCGCGAGAGCTGATAGAGATGCTCGCTCTGTCCCGAACCCAGAAGCTCCCGCAGCCCGGAGAGGACACTCAGgtgctggagctgctggttcaGAGGGATAAGGAGTTTCAGGAGCTGATGCAGACGGCGGTGGAACAGGGCAGGATCCATCAGGAGATGCAGCAGCTGGAGAAAGAAGcagaaaagagagacagtgacATTCAGCTGCTGCAGAAACAGCTGAAAGAGGCCGAGCACATCCTGGCGACGGCTGTTTACCAGGCCAAAGAGAAGCTCAAGTCCATCGAAAAGGCCAGAAAAGGCAGCATCTCTTCAGAGGAAATAATTAAGTATGCGCACAGGATAAGCGCCAGTAATGCAGTGTGTGCTCCTCTTAACTGGGTTCCAgGTGATCCTCGGAGGCCGTATCCTACAGATTTGGAGATGCGCAGTGGGATGCTGGGACACATGAGTAACCTGCCCACTAACGGTGTGAACGGACACCTGCCGGGAGACGCACTGGCTGCCGGGAGACTACCAGATGTTCTCACGCCTCAGTATCCCTGGCAATCTGACGTTTCCATGGGGATGCTGCCTCCTCACCACGGCAATGACTTCGGCCTGGAGCCGCCGGGACACAACAAGGAGAACGAGGACGATGTGGAGGCCATGAGCACCGACtcgtccagcagcagcagcgactcggattaaagagagagagggtgtgtgagggtgtgtgagggtgtgtgagggtgtgtgtgggtgtgtgtgggtgtgtgagggtgtgtacGACTGCTTTCCTGCTTCTTACCTTCATTTTCAGGTTTATAGATCTTATATTCAGTCACTCAGCTGCGACTCTGCTGTTCAGAGTTTTGCAGTGAAGCTAACAGAGCTAACACATAGGAGAGGCTAATCTCCCAAACACTTCCATTTAAATAAGAAACATCTAAACCCAGATAGATCGGTTCATAGACAGAAATTAGGATTGTAATAATTCTAGTTTGGTTTAAAGCTCCAGTGCTGAATGAGAAAATCCTATTTAAATCTTCTCCATCTCCTTTTCTTTTCCCTGTgtttactttagttttttactttttggttGATAAATTACCCTGATGATGTCAGTCTCTACCACGTGTTTGTAAAAGCAGGTTTTGTGTAAATAGTGttaatgtaaatatgtttttgcGTTTTCAGACGctgtaaataaagttttcttttgctaaaataaa

Function

symbol description
med4 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of core mediator complex. Orthologous to human MED4 (mediator complex subunit 4).

NR:

description
mediator of RNA polymerase II transcription subunit 4

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016592 mediator complex cellular_component

KEGG:

id description
K15146 MED4; mediator of RNA polymerase II transcription subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235508.3 True 1311 mRNA 0.49 7 55893 61084

Neighbor

gene id symbol gene type direction distance location
LOC103028530 NA coding upstream 1959 63043 ~ 73490 (-)
LOC111191691 NA coding upstream 13672 74756 ~ 88024 (-)
LOC103042938 NA coding upstream 36482 97566 ~ 99679 (-)
cnot11 cnot11,LOC106582250 coding upstream 67753 128837 ~ 135027 (-)
trnal-caa_87 NA coding upstream 74258 135342 ~ 135451 (-)
LOC111191692 NA non-coding downstream 1302 52894 ~ 54591 (-)
G323836 NA non-coding downstream 27575 28020 ~ 28318 (-)
G323902 lcp1,LOC108439517,LOC107732195,LOC107660271,LOC107740717,LOC107685450 non-coding upstream 62532 123616 ~ 127776 (-)
G323904 rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715 non-coding upstream 74916 136000 ~ 139374 (-)
G323906 NA non-coding upstream 79248 140332 ~ 147574 (-)
G323909 NA non-coding upstream 102825 163909 ~ 164575 (-)
G323911 NA non-coding upstream 111857 172941 ~ 196305 (-)
lrrc63 NA other upstream 42874 103958 ~ 112037 (-)
nms nms other upstream 113890 174974 ~ 179325 (-)

Expression


Co-expression Network