edar (edar,LOC107566566)


Basic Information

Item Value
gene id edar
gene name edar,LOC107566566
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 217353 ~ 271612 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667267.1
CGTGCTCCTCGGATCTACCTGGTCAGGTTCCCTGCGCGCGCGCGGGCGGACAGCATCAGCGCCTTCTCTGCTCGCGAGGAGGAGCCAAGCTCAGCTCAGATCTTCACCCGGAGCCGCGGAGAAGCGCCCAGACCCCTCACTCCTCCACCGGCCCTGCGCGAGCCCTCACCGTCCCCGAGAGCGCGAGACTCAACACCTTTACCTGTCTGGACTTTAACTTctgctcctgctcctcctcctcctcgttcTCCTGCAGAGTTATCTCAGGAGGAACGTGCTGAAATGATGTCCTGGAAGGCGTGGCCAATGGATTCCCGCCTCGTCTCATTTCTATTGgtatCCAGTGTGTCTCTGCTGAGGGCAGAGTACTCCAGCTGTGGAGAGAATGAGTTCTATAATCACACCAGCAGCAGCTGCCAGGCGTGCCCACAGTGCCAACCCGGACAGGAACCGTACatgaaCTGTGGTTACGGTACTAAAGACGAGGACTACGCCTGTGTTCCGTGTCCGGCGGGGAAATTCTCTAAAGGAAAGTATGAAATCTGCCGGCGGCACAAAGACTGCGACTCTCTGTACCGAGCCACCATGCTGACGCTGGGCACGCCGCACAGCGACGCCGAGTGTGGAGCCTGTCTGCCCGGgtaTTACCTCTTAGAGTCCCGACCGAGAAACATCTACGGCATGGTCTGCCATTCCTGCCAGAACGCCCCGCCCAACACCATCCAGTGTACGAGAACACAGGTGGTTCCACCAGGACTCGCTCCTGGAGTGTCCTCCTCAACCAGCACCACCATCTTCCCTCAACCTGAGAAAGATCCAACAGGGCAGGGTCACCTAGCAACAGCGCTCATCATCGCCAtgtccaccatcttcatcatggCCATCGCCATCGTGATGATCATAATGTTCTACATCCTGAAGGCCAAGCCGAGCGGGCAAGCATGCTGCTCTGGACAGATCGTGAAGACCATGGAGGCTCCGACCACCAAGATGGAGGAGAAGAAAGAAGTTAAAGAGAGTGTGGTGATATTCGCTGAGAAAGACGAGTTCGACAAGCTGAAGCCGCCTCCTCCTAAACCAGTGAAAAGTGAAAATGACGCGTCGTCGGAGAACGAGCAGCTGCTGAGTCGCAGCATCGACAGCGATGAAGAGGCGGCGCAGGAAAAGCAGGGAACCGCCGACCTCTGCCTGCTGTCCCTCGTCCACCTCACCAGAGACAAAGCCTCTTCCATCGGCaccatcaacaacaacaacaactgcagcagcagcagcaaagcCATGGGGATTCACAGTCGGAGGAAGAAAATCCTGGATTTGTACACAAAAGCCTGCAGTGTTGCAGAGGgTCTGAGCCCCATAGAGCTCCCCTTCGACTGTCTGGAGCGCACCAGCCGCATGCTGAGCTCCACCTACAGCACGGACCGAGCCGTGGTGAAGACCTGGAGGCATCTGGCCGAGAGCTTCGGGCTCCGGAGGGACGAGATCGGGGGAATGACGGACGGGATGCAGCTCTTCGACAGAGTCAGCACCGCCGGCTACAGCATCCCGGACCTGCTGACCCGGCTGGTGCAGATCGAGAGGCTGGACGTGGTGGAGGCTCTGTGCTTCGACCTCCTCGGAGAACTGGAGAGCGGAGCTCCTCCACCCAGACAGAACCTGACGCTCTCCTCCCGCTGCGCCAGCGTTTAACAACCTGGACCCTTCCCTCGCTCCGAATCACATGAAGAAACCCGGCCCACCGGTCCAGGAGACCCTGCGCTGTTGGGCTCAGTTAAAGAGACTTTTTAATGGTCAGTTCTTCAGGTTTAATGATGGAAGATCCTGAAGATCTCTTTAAAATTTTACACAAATGAGAAATCTGTCTTATTTTCAGGGCTTCCCTCAGAACTCAGAACTTTGCTTTGTTTGTACTGATCCTCACGTCTGAACAGGCTCTAAAATGGTTGTAGATTCAGCGCTGGACGCCAGTATTAAGGACATGAGCGGAGACATcggtattattttgtttaaactgGAGCTGGAGCTTTGTGTGGTTCCTCACACTTTATTGAAATATCTAGACTGAGCAGAATCACATGACTCCTCATATATTTTTGTCTCCTGTTTGCTGATGTGAGAAAACTGGGCCACAGATCGCTCTGTGTGACTtactttttagcttttttgagtagaaaaacaaattaatttaatgtaggCTCATTGTTAGGAACAGGCTAAACACAACTAAACACAACTGAGCAtcaaggcccaatcccatttaggcatgtcccgattcttgttaggctggaggggtaggttaggaGATTTTTCAGATTCAGCACACTTCAATCCGAGGGgaatgagaatcactggtaagatgacGCTTCCACAAGTGACCAAAGCTCACAAATgtcagtattttccttgttaaaagtgatgattagcTCTGTATGaccatagtttaatgttttatgtcGAAATTCtttaacaagcataaaaaggtCTCAACTAgttcaagctaactttcccgttcaaccttaaatggtgcagatGGAACAGATGGAAGGGGCTtgagcatttaaggtggaatggtaaaataaaataaaataaaagctaatcaaagctaattaaagctcctcatcacagattaaggaattaataatcatttCTGCACAATCTCCCCcctcctttctgaagacatacaataaaatacgtCTAGAGTttttgtgatgctactctgtaatgctgcatcagcagcagttcaaaaagaggcggagtcttgCTTTacgtgtatcggaggaggcgtgtgctggtcttcactcccctggtgttggagcatcactagtgataggaggagtcctaatgagtgggttgggtaattggccgcgtaaattggggagaaaatgggaaaaacaaagaaagaaacactgaatCACACGTGAGAATATCAATCTAATACTCTACTTTTAAAAACTGGATAAAAATTGACTGGAGtgtttatctaaaaaaatgaaCTTGGAAACTTGGAAAAAGACAAATCTGTAGTTAAATATCGTAATCAAACATCGTAACATCCTAATTACTTCACAGATTAAGACGtttttctaatttgtagctcaCGTCTGcagtttttaagagtttcttGGGTTAGTTTTGGCTCTCAGGCTCGTTGTTCTCAGTTCAGACGTCCAAATGCCTCCAGTGGTGATTCTACGTTTGATTGCTCGCGCTCTGGCTGTTCGGACACGCAGTAAGATTATCAGCTCCAGCGTTCGGAGACTCCTCGTAACTCAGCGTGTTCCCCTGTGGCTAGCCGCTGGCGCTCGCTCTAATTGGCTGGAATTGGTGGTTTACAGCTCTTGGTGTAAAGTGCCTGTGATTTCCAGCACCTCATTAAGTAACAAGACCAAATGGAAAAGCCATAAAGCGAGCGGGGGGGCGGCGGGGCGAGCGGTTAACTGTGAGCAGAAGGTAGAAATGAAGCATTAAAAGAGCTGAGATTCTGAGGACCTGGTACCACACAGTGACCCGGACGGCCCGGCCGACCCAGAGGCTGCTGGGAAACGTCTTCCTGAGCTCGAGGAAACAAGTGCTCCTGACTGAAAGCAGACTCTGAGATTTCGCGTGGCCCCGGGCCGCGTCTGCGTGAACCGCGTGCAGCTTTTTATCACGTATTCGCTGGTTTGGTTCGCTGGCTGTAAACGCCTGACAGCAAAATAAAGCAGAACTCGAGGAGGAAGAATGTAGAAAGCTATCAAAACATCTGGTTACGATCAGTGACCAACATCTGTACAGACCTGGTCAACTTACctcattaacattatttttatgacAAGAGCAAAAGTTTAGGAAATAGCAGAGAAACAACCCTTACAGAATATGAGTGTATATATAACTTattactgtacatactgtatgcATCATGTTAAGAAGTAtcaataaaattacttttaaaatgtt

Function

symbol description
edar Predicted to enable signaling receptor activity. Acts upstream of or within dermal bone morphogenesis and fin development. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including epidermal cell; integument; mouth; pectoral fin skeleton; and pelvic fin bud. Human ortholog(s) of this gene implicated in ectodermal dysplasia 10A and ectodermal dysplasia 10B. Orthologous to human EDAR (ectodysplasin A receptor).

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member EDAR

GO:

id name namespace
GO:0060348 bone development biological_process

KEGG:

id description
K05162 EDAR; tumor necrosis factor receptor superfamily member EDAR

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667267.1 True 3939 mRNA 0.49 12 217353 271612

Neighbor

gene id symbol gene type direction distance location
tbc1d8 tbc1d8 coding downstream 49917 141909 ~ 167436 (-)
trnal-caa_87 NA coding downstream 81902 135342 ~ 135451 (-)
cnot11 cnot11,LOC106582250 coding downstream 82326 128837 ~ 135027 (-)
LOC103042938 NA coding downstream 117674 97566 ~ 99679 (-)
LOC111191691 NA coding downstream 129329 74756 ~ 88024 (-)
G323917 NA non-coding downstream 6938 195401 ~ 210415 (-)
G323911 NA non-coding downstream 21048 172941 ~ 196305 (-)
G323909 NA non-coding downstream 52778 163909 ~ 164575 (-)
G323906 NA non-coding downstream 69779 140332 ~ 147574 (-)
G323904 rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715 non-coding downstream 77979 136000 ~ 139374 (-)
nms nms other downstream 38028 174974 ~ 179325 (-)
lrrc63 NA other downstream 105316 103958 ~ 112037 (-)

Expression


Co-expression Network