lrrc63


Basic Information

Item Value
gene id lrrc63
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 103958 ~ 112037 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667275.1
GcctgttttaaataatatgatCTATATTTGGAATTATAATCTATCTACGGTGCACAGAAATcattataaatgattaaatcGAATTTATTTAAAGGAGAATGGGATTATAAAGCGGTGAGATAACGTTACTGCAGTGTTTGGCTGTTTGCGCTTTTGGCGTAGATTACTGCGTAGTTGCTACGGGTCTTAGCGTAGTTACTACAGACTCCAGCACGAGACTGAGAAACAGCACAACCAatgagagtgagagtgagaaggGAACCCAAGATCATCTGATAAAAATTCTCACTTGGCCACAATGGGATCTGAACATGTGCAGCTCCTGCGGAGACCCCTACCCCCCAAAACACTCCAACCCATCCTCAAATCTTCACTGAAGAAGACTGAGGTTTTGGATGCAGTGATGGAGTCCATCTCTTCCAGAGTCCGCTACAGCATGGAAGGAAGTGGGTGGAGTTTTCATGATGACACATCCCCATTAGATTTTGATCCACAGCTGTCCCACGTCTCCCCTACACCTGTCTCCATCCAGTCCGCATTACGTCCCTCCATGTCCCCCACAATCACCAGTTCCTTTCCTTGTCGTCCTCAGCGGACGCTCCGCCGCTCTCTTCTTCTGGAGCTGCTGAGTGATCATCCACGCTACACCCAGCCTCCACCCTACCTGAGCTCTAACCACCTGCAGAAACCCGCCCAACCTGTGCTGGAGTTCACCCAACCTGACCAGGTCCTGAACACCATGATCCGATCCCAGCACACCTACAGGAAGCTGGTGGATCTCTTCCTGTATGAGCTGCACAGCGGCCAACAGGACCAAGTGACCAATCAGATCTTCAGCTGGGAAGATCTACCACAGGCCCAGCGCAGATTCCCACAGATAATATACGaGCTGGTTGCACAGGTTCGAATGGAGCTCCAGGCACGTATAGGGTCACGCCGCTCTACAGAGAAATCTCTCATCCAGACTCAGCAGAACTCAGTGGAGCCGTGGACTCAAAACAAATCACAGACTGAACCCATAAACCTCCACCTGTATCCAGTGAATGAGGTGATGAGCTGTTTCCCGGTTAAGTTCTTCCAGGGTTCCTGCAGATCGTCTTCACCCTTCCTGGCTGCAGCGGAGTGTGTGATGATCAGTCTCACTGAGCTGGCCATAATTGAGTGCCTCACAAAGCATGGCACCAGCCTCAACctcaagGCCCATTTTATCTCCCAGCTGCCTGATCTGTTTCTGCTGCGTCAGAATCTGCTCTACCTCAACCTGTCCTTCAACAGCTTCACTGTGTTTCCAGTGGAGGTGTGTGAACTGGCACGGCTGGAGGTGCTGAAGCTGAGAGATAACCCAATAGAGGAGATCCCAGCTGATATCCAGAAGCTCCTCAACCTAAAGACCCTGATCATCTCCTTCTGCAAGATCAGATCCCTGCCCTCCCAGTTGTACCATCTGACCTCTTTGCAACACCTGGACGTGTCGTACAACCTCATCAGTTCCCTGAGCAGTGAGATCAAAAACCTCAGgtctcTGCAGTATCTGAGTGTGGAGGGGAATCAGGTGGAGGCTCTGCCGGTGGGGGTTGTGTATTTGAGggtgggtgtgtgtgagtgctgtggTGGTGTTCTGTTTGGACCGGGACTGAAACTGATCCATCCCGTTCAGGATCTCTTCGGTCTTAGGAGCGTCCCGATCCTGTTGCAGTCCTGCTCCACCTCCTGCTTCTCCACCTTCAGGAACCAACCACACCTCCTCACACAGACTCTTCTCAccagaaaaacaacaaacaaacagcagctTTAATGCGTTTTCagatttattgttttgtgtttttcttaaaaCTAAATTAGAACATGACataattactaaattaaaataaactaactgttaaagctgtgctcctcagtccagcacagttttgcagtgcagatatttc
>XM_022667276.1
CCCATCCTCAAATCTTCACTGAAGAAGACTGAGGTTTTGGATGCAGTGATGGAGTCCATCTCTTCCAGAGTCCGCTACAGCATGGAAGGAACGGACGCTCCGCCGCTCTCTTCTTCTGGAGCTGCTGAGTGATCATCCACGCTACACCCAGCCTCCACCCTACCTGAGCTCTAACCACCTGCAGAAACCCGCCCAACCTGTGCTGGAGTTCACCCAACCTGACCAGGTCCTGAACACCATGATCCGATCCCAGCACACCTACAGGAAGCTGGTGGATCTCTTCCTGTATGAGCTGCACAGCGGCCAACAGGACCAAGTGACCAATCAGATCTTCAGCTGGGAAGATCTACCACAGGCCCAGCGCAGATTCCCACAGATAATATACGaGCTGGTTGCACAGGTTCGAATGGAGCTCCAGGCACGTATAGGGTCACGCCGCTCTACAGAGAAATCTCTCATCCAGACTCAGCAGAACTCAGTGGAGCCGTGGACTCAAAACAAATCACAGACTGAACCCATAAACCTCCACCTGTATCCAGTGAATGAGGTGATGAGCTGTTTCCCGGTTAAGTTCTTCCAGGGTTCCTGCAGATCGTCTTCACCCTTCCTGGCTGCAGCGGAGTGTGTGATGATCAGTCTCACTGAGCTGGCCATAATTGAGTGCCTCACAAAGCATGGCACCAGCCTCAACctcaagGCCCATTTTATCTCCCAGCTGCCTGATCTGTTTCTGCTGCGTCAGAATCTGCTCTACCTCAACCTGTCCTTCAACAGCTTCACTGTGTTTCCAGTGGAGGTGTGTGAACTGGCACGGCTGGAGGTGCTGAAGCTGAGAGATAACCCAATAGAGGAGATCCCAGCTGATATCCAGAAGCTCCTCAACCTAAAGACCCTGATCATCTCCTTCTGCAAGATCAGATCCCTGCCCTCCCAGTTGTACCATCTGACCTCTTTGCAACACCTGGACGTGTCGTACAACCTCATCAGTTCCCTGAGCAGTGAGATCAAAAACCTCAGgtctcTGCAGTATCTGAGTGTGGAGGGGAATCAGGTGGAGGCTCTGCCGGTGGGGGTTGTGTATTTGAGggtgggtgtgtgtgagtgctgtggTGGTGTTCTGTTTGGACCGGGACTGAAACTGATCCATCCCGTTCAGGATCTCTTCGGTCTTAGGAGCGTCCCGATCCTGTTGCAGTCCTGCTCCACCTCCTGCTTCTCCACCTTCAGGAACCAACCACACCTCCTCACACAGACTCTTCTCAccagaaaaacaacaaacaaacagcagctTTAATGCGTTTTCagatttattgttttgtgtttttcttaaaaCTAAATTAGAACATGACataattactaaattaaaataaactaactgttaaagctgtgctcctcagtccagcacagttttgcagtgcagatatttc
>XM_022667277.1
CTCCTGCGGAGACCCCTACCCCCCAAAACACTCCAACCCATCCTCAAATCTTCACTGAAGAAGACTGAGGTTTTGGCGGACGCTCCGCCGCTCTCTTCTTCTGGAGCTGCTGAGTGATCATCCACGCTACACCCAGCCTCCACCCTACCTGAGCTCTAACCACCTGCAGAAACCCGCCCAACCTGTGCTGGAGTTCACCCAACCTGACCAGGTCCTGAACACCATGATCCGATCCCAGCACACCTACAGGAAGCTGGTGGATCTCTTCCTGTATGAGCTGCACAGCGGCCAACAGGACCAAGTGACCAATCAGATCTTCAGCTGGGAAGATCTACCACAGGCCCAGCGCAGATTCCCACAGATAATATACGaGCTGGTTGCACAGGTTCGAATGGAGCTCCAGGCACGTATAGGGTCACGCCGCTCTACAGAGAAATCTCTCATCCAGACTCAGCAGAACTCAGTGGAGCCGTGGACTCAAAACAAATCACAGACTGAACCCATAAACCTCCACCTGTATCCAGTGAATGAGGTGATGAGCTGTTTCCCGGTTAAGTTCTTCCAGGGTTCCTGCAGATCGTCTTCACCCTTCCTGGCTGCAGCGGAGTGTGTGATGATCAGTCTCACTGAGCTGGCCATAATTGAGTGCCTCACAAAGCATGGCACCAGCCTCAACctcaagGCCCATTTTATCTCCCAGCTGCCTGATCTGTTTCTGCTGCGTCAGAATCTGCTCTACCTCAACCTGTCCTTCAACAGCTTCACTGTGTTTCCAGTGGAGGTGTGTGAACTGGCACGGCTGGAGGTGCTGAAGCTGAGAGATAACCCAATAGAGGAGATCCCAGCTGATATCCAGAAGCTCCTCAACCTAAAGACCCTGATCATCTCCTTCTGCAAGATCAGATCCCTGCCCTCCCAGTTGTACCATCTGACCTCTTTGCAACACCTGGACGTGTCGTACAACCTCATCAGTTCCCTGAGCAGTGAGATCAAAAACCTCAGgtctcTGCAGTATCTGAGTGTGGAGGGGAATCAGGTGGAGGCTCTGCCGGTGGGGGTTGTGTATTTGAGggtgggtgtgtgtgagtgctgtggTGGTGTTCTGTTTGGACCGGGACTGAAACTGATCCATCCCGTTCAGGATCTCTTCGGTCTTAGGAGCGTCCCGATCCTGTTGCAGTCCTGCTCCACCTCCTGCTTCTCCACCTTCAGGAACCAACCACACCTCCTCACACAGACTCTTCTCAccagaaaaacaacaaacaaacagcagctTTAATGCGTTTTCagatttattgttttgtgtttttcttaaaaCTAAATTAGAACATGACataattactaaattaaaataaactaactgttaaagctgtgctcctcagtccagcacagttttgcagtgcagatatttc
>XR_002649601.1
cctgttttaaataatatgatCTATATTTGGAATTATAATCTATCTACGGTGCACAGAAATcattataaatgattaaatcGAATTTATTTAAAGGAGAATGGGATTATAAAGCGGTGAGATAACGTTACTGCAGTGTTTGGCTGTTTGCGCTTTTGGCGTAGATTACTGCGTAGTTGCTACGGGTCTTAGCGTAGTTACTACAGACTCCAGCACGAGACTGAGAAACAGCACAACCAatgagagtgagagtgagaaggGAACCCAAGATCATCTGATAAAAATTCTCACTTGGCCACAATGGGATCTGAACATGTGCAGCTCCTGCGGAGACCCCTACCCCCCAAAACACTCCAACCCATCCTCAAATCTTCACTGAAGAAGACTGAGGTTTTGGATGCAGTGATGGAGTCCATCTCTTCCAGAGTCCGCTACAGCATGGAAGGAAGTGGGTGGAGTTTTCATGATGACACATCCCCATTAGATTTTGATCCACAGCTGTCCCACGTCTCCCCTACACCTGTCTCCATCCAGTCCGCATTACGTCCCTCCATGTCCCCCACAATCACCAGTTCCTTTCCTTGTCGTCCTCAGCGGACGCTCCGCCGCTCTCTTCTTCTGGAGCTGCTGAGTGATCATCCACGCTACACCCAGCCTCCACCCTACCTGAGCTCTAACCACCTGCAGAAACCCGCCCAACCTGTGCTGGAGTTCACCCAACCTGACCAGGTCCTGAACACCATGATCCGATCCCAGCACACCTACAGGAAGCTGGTGGATCTCTTCCTGTATGAGCTGCACAGCGGCCAACAGGACCAAGTGACCAATCAGATCTTCAGCTGGGAAGATCTACCACAGGCCCAGCGCAGATTCCCACAGATAATATACGaGCTGGTTGCACAGGTTCGAATGGAGCTCCAGGCACGTATAGGGTCACGCCGCTCTACAGAGAAATCTCTCATCCAGACTCAGCAGAACTCAGTGGAGCCGTGGACTCAAAACAAATCACAGACTGAACCCATAAACCTCCACCTGTATCCAGTGAATGAGGTGATGAGCTGTTTCCCGGTTAAGTTCTTCCAGGGTTCCTGCAGATCGTCTTCACCCTTCCTGGCTGCAGCGGAGTGTGTGATGATCAGTCTCACTGAGCTGGCCATAATTGAGTGCCTCACAAAGCATGGCACCAGCCTCAACctcaagGCCCATTTTATCTCCCAGCTGCCTGATCTGTTTCTGCTGCGTCAGAATCTGCTCTACCTCAACCTGTCCTTCAACAGCTTCACTGTGTTTCCAGTGGAGGTGTGTGAACTGGCACGGCTGGAGGTGCTGAAGCTGAGAGATAACCCAATAGAGGAGATCCCAGCTGATATCCAGAAGCTCCTCAACCTAAAGACCCTGATCATCTCCTTCTGCAAGATCAGATCCCTGCCCTCCCAGTTGTACCATCTGACCTCTTTGCAACACCTGGACGTGTCGTACAACCTCATCAGTTCCCTGAGCAGTGAGATCAAAAACCTCAGgtctcTGCAGTATCTGAGTGTGGAGGGGAATCAGGTGGAGGCTCTGCCGGTGGGGGTTGTGTATTTGAGGTGTGTATCTGAACTCAGGTTGGGGGGGAACTACACACACCCCTGCTGTGGATCTTAACCAGCTCCACCTCTCCAccatccctcacacacactgcagcacgaGCCCtgaccctcacacacaccccgaAACAGCACTCCAACCTGCCCCCTGCAGCCCAGCTCATACTcagcagggtgggtgtgtgtgagtgctgtggTGGTGTTCTGTTTGGACCGGGACTGAAACTGATCCATCCCGTTCAGGATCTCTTCGGTCTTA

Function

GO: NA

KEGG:

id description
ko05016 Huntington disease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667275.1 True 1928 mRNA 0.49 10 103958 112037
XM_022667276.1 False 1427 mRNA 0.51 10 103958 111159
XM_022667277.1 False 1412 mRNA 0.51 9 103958 111195
XR_002649601.1 False 1845 misc_RNA 0.51 10 104213 112036

Neighbor

gene id symbol gene type direction distance location
LOC103042938 NA coding downstream 4279 97566 ~ 99679 (-)
LOC111191691 NA coding downstream 15934 74756 ~ 88024 (-)
LOC103028530 NA coding downstream 30468 63043 ~ 73490 (-)
med4 med4,LOC107673119,LOC107709409,LOC107724027,LOC107601074,LOC107675337 coding downstream 42874 55893 ~ 61084 (-)
cnot11 cnot11,LOC106582250 coding upstream 16800 128837 ~ 135027 (-)
trnal-caa_87 NA coding upstream 23305 135342 ~ 135451 (-)
tbc1d8 tbc1d8 coding upstream 29872 141909 ~ 167436 (-)
edar edar,LOC107566566 coding upstream 105316 217353 ~ 271612 (-)
LOC111191692 NA non-coding downstream 49367 52894 ~ 54591 (-)
G323836 NA non-coding downstream 75640 28020 ~ 28318 (-)
G323902 lcp1,LOC108439517,LOC107732195,LOC107660271,LOC107740717,LOC107685450 non-coding upstream 11579 123616 ~ 127776 (-)
G323904 rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715 non-coding upstream 23963 136000 ~ 139374 (-)
G323906 NA non-coding upstream 28295 140332 ~ 147574 (-)
G323909 NA non-coding upstream 51872 163909 ~ 164575 (-)
G323911 NA non-coding upstream 60904 172941 ~ 196305 (-)
nms nms other upstream 62937 174974 ~ 179325 (-)

Expression


Co-expression Network