tbc1d8 (tbc1d8)


Basic Information

Item Value
gene id tbc1d8
gene name tbc1d8
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172900.1
NCBI id APWO02000129.1
chromosome length 294554
location 141909 ~ 167436 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667279.1
aaaacatgaagctgGAGCGCCGGAGATCCCGAGGAGCTGCGCGCGGGGACCGGAGGCGCCCGGGTCGGGTTAGCGGGGTTATGGGCGCGCGGTGAGCCGGGAGGAGAAGCGCTGTTAGCGGGGGTTTAGTGGAGGGTTAGTGGGGGTTAGTGGGGATAGAGGGGTCTAGTGAAAGGATGTGGTTAACTCCTGAAGAGGTTTCCCAGAAAAACGCCCTGAAGCTCTGGGTGACAGAAAAATCCAACGATTACTTCATCCTGCAGCGGAGGAGAGGACATGGAGACAGCGGGGGGAAAATCAcagGTATGTTGGTGGGGGCGCTGGACACCGTGTTGGACTCCAACGCTCGAGTGGCTCCGTTCCGGATTCTTCTTCAAGTGCCGGCGTCACCGGTCAGCTGGGTCATCGCCAGTGgaGCTACAGTTGAGGAGGTGCAGAAACACTGGAAATGGCTGGATCAGAACCTGCTGCCGTACATGGCCGTGTTTGAGAATAAACAGGATGCTGCAAGCTTCGCTCAGGGAAAAGTCAAGggtcTGATAGCTGAAGAGGTTCTGGCCGGTCAGGCTGCTCTGGAGGATGATCCGGCCCGGTTCAGGGAGGTTCTGGCGCGGTTCGAGCAGCGGTTCGGTCTGCCTCAGCAGGAGAAGCTGGTGGCTCATtattcctgctgctgctggaaggGGCGGGTCCCTCGGCAGGGCTGGCTCTACCTCTCCACCAATCATCTCGCCTTCTACTCATTCTTACTGGGGAAGGAAGTGAAGCTACAGGTGCCGTGGGTGGAGGTGACGGGGATGGAGCAGACGACTCTGGGCCTGATGACGGATGTGATCCGGGTGCGGACGCGGCAGAAGCAGCGAGAGTTCTCCATGTTTCTGAACGTGGACGAGGTGATGACCGTGATGACCCAGCTGGCCGACCTGGCGCTGCGCAGACTGCTGGACAGCGGTGGACTGGAGGTGGACCAGAGCCTGCAGCAAGCCACCAATATTACCAAACGagtgctggagcagcaggcTCTGAGGCAGTATGTGTTGTCTCTGTTGGGGTTGCCGCGGTCGGAGAAGCTGCAGGAGGTGTTGAGCTGCTCGGTGTGGACTCCTCACGCTCGCTGCCACACACCCGGAAAACTCTACACCACCGACAACTACATGGGGTTCAGCAGCCGCCAGGAGGGAGTCTGTACCCTCCTCATCCCACTCGCAGAGGTCCAGTCCATCGAGAAAGCGGAGAGTACGAGCGCTCTGCCGAACCCGGTGATCATCAGCGTGAAGTCTAAGAAAGCTTTTCAGCTGATTGATTTGGCACAGAGGGACGAGCTGGTGGATAATCTGACTGACCGGCTGCGGTGTCTGCACTGGAGACAAGCCGTGTTCAGAGGAAACAGTCAGCGCAAAAAATCACTGatCTCTCCGACTCCATACTACACGTTTTATTACGACACAGATACTCTGAGCCCGGAGGAGGGTGATGGTGTTTCTGATGAAGCTCTGAGGAACACAGTGCTGACCGAATCTCTCATCACCACCTTTCAAACCGGCCAATCACAGTCCCCCAACCACAAAACTacatCAGAGCAGCTGAAGGTGCGGTTGTGGGAGGATCACTTTGAGGAGTTCGGTCGGGGGGTGCACATGTTTCGCACGGATAAGATCCGGAAACTGGTTGCCATGGGGATCCCCGAGTCCCTGCGTGGAGAGATGTGGCTCACCTTTTCAGACGCCTGCTCGTCTCTCTCTGCTCACCCGGATTATTACTCAGATCTGGTGAGCAGGAGTATGTGTGAGACCAGCGTGGCGACTGAGGAGATCGAGAGAGACCTGCACCGCTCTCTACCCGAACACTCCGCCTTCCAGAACCAGACCGGAATCTCTGCTCTGAGGAGAGTCCTGACCGCCTACGCTCACCGAAACCCCAACATCGGATACtgccagtCTATGAACATCCTGGCGTCAGTGCTGTTGCTCTACACAAGGGAAGAGGAGGCGTTCTGGCTGCTGGTGACGGTGTGTGAGAGGATGCTGCCTGATTACTTTAATCACAGAGTCATCGgtgcTCAGGTGGATCAGTCGGTGTTTGAGGAGCTGATCCGGGAGCGTTTGCCGTCTCTCTCTGAAAGTGTTCCGGATCTGTCTCCGCTGGCGTCGGTGTCTCTGACCTGGTTCCTCACGCTGTTCCTGAGCGTTCTCCCGTTCCGCAGCGCGCTCCACGTCCTCGACTGCTTCTTCTACCACGGCATCAAAGCCGTGTTCCAGCTGGGGCTCGCCGTGCTGGACGCCAACGCCGCCGAGCTCAGCACCAGCACCGACGACGGCCAGGCCCTAATGACCCTCACCAGTTTCCTTGAACAGGTGCGAGATGACGATgagccgtgtgtgtgtgctgaggagGCGGGACCTGCTGGACACACCCACATCACCACACTGATCAATGATGCGCATGAGaaattTGGGGACCTGACGGTGAGACAGCTGGAGAAGATGAGAAGTAGACACAGGATTCATGTCCTGCAGAATCATGAGGACACCACTAAAGAGAACACTCTCAGGCTGGTCTCACCTGATGTCTCACTGTCTCAGGAGGACCTGTCTAGCCTTTATGACCTGTTTAAGacagAGCACTTTATCAGTCTGTACTGGGGGGATGGAGTGTGTAGGGAGGTGCGGGCGGGGGGTCGGGGGTACACTGAGAGTTATCATGTGGACCGGGCTCAGTTTAAGAGTCTGTATCTGCTGCTGACCCCGTGGCCCTGCGGCCCCCACACCGACACCATGGCCCAGAGAACCTTCGCCCTGCTGGACCAGAACCACCACAACCGCATCAGCTTCACACAGTTCTCCCGCTGGCTCGaCACTCTGTACTGTGAAGAGTTTAATGAGAAGGTCCGGCTCCTCTATCGCCTCCACATCCCTCCAGctcTGACTGAGAATGAAGATCAGTCTTCTGCAGGGAAGAACCCCATCCTTTCCACCAACAGACCCCTCTATGTGGATCTACCAAACGTGGAGAGGAAGACTCATGAGGAGCAGCTGAAGCAGATGCTGAAGGATTTGgctaaagagagggagaaaggccAGGAGAAACCCCTCCCTCAGATGAAACAGCGGGAGTTCGTTCAGTTCTGTAAGACTCTGTGCTGCATGTTTCACGGGGACAGCGCGGAGAACGAGCTCTTCCAGGCCATCGCCATGGTCACCAGCCTCGTCCTGCAGATCGGAGAGGCCAGGAATAAAGGGCGTCGGCCGTCGGGGGCGGAGCCTGAGGAAGGGAAGAGCCCGGATCGGGCGGCCTCGGACCCGGCGGAGGTGGAAGGTGATTGGACGGTGAGTTTTGAGCAGATCTTGGCCTCGCTGCTCACAGAGCAAGCTCTCGTCAACTTCCTGGAGAGACCCGTCGACCTGAACCATAAGATCTGCTCTGCCAAGGAGAAGCAGTACCAGACCCGATCCGGACTGCTGATGATCCAGAGCAAGACCAgatgagacgagacgagacgagcaTTAAAACGTGGTTTATGAAGATTCTGGACTTTAATCTGAAACAGGATTCTGTAGGATTCTTGGTTTCTTATCATAAAACAGACGATCTGTGAGGAACCAATCAGAGCAAGAGCAGaacagataaagataaagactTCCTGCTCTCCAGGAAACCAGGGGATGCTTACATCCATAAAGTGCCCTCTGGTTCTCACGCCCCTGTAGGTGTGGTGGTGTAGTTGTGGTGTTTAAGAGCAGGGagacactaaaatgtgcaggacaggGGCTCCAGGAGCAGCGCTGAAGGAAACAGAACTGcataaactagaaaaaaacagctttggGACCATCGAGGGAAGCTGGACTtcctttataaaacaaaacagggcGTGAAATCCAAAAGCAGAGTTGAGTTTACTTCTAATATGAGACGGATCtgattaatttatgtttaaagaaatgaaaatgaagaaaatactagtaagtgctgtttttttattcagtggaAACTCTACTGAAAACAGCggattagagaaagagagagtgaaa

Function

symbol description
tbc1d8 Predicted to enable GTPase activator activity. Predicted to be involved in activation of GTPase activity and intracellular protein transport. Predicted to be located in membrane.

NR:

description
PREDICTED: TBC1 domain family member 8

GO: NA

KEGG:

id description
K19951 TBC1D8_9; TBC1 domain family member 8/9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667279.1 True 4031 mRNA 0.55 22 141909 167436

Neighbor

gene id symbol gene type direction distance location
trnal-caa_87 NA coding downstream 6458 135342 ~ 135451 (-)
cnot11 cnot11,LOC106582250 coding downstream 6882 128837 ~ 135027 (-)
LOC103042938 NA coding downstream 42230 97566 ~ 99679 (-)
LOC111191691 NA coding downstream 53885 74756 ~ 88024 (-)
LOC103028530 NA coding downstream 68419 63043 ~ 73490 (-)
edar edar,LOC107566566 coding upstream 49917 217353 ~ 271612 (-)
G323904 rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715 non-coding downstream 2535 136000 ~ 139374 (-)
G323902 lcp1,LOC108439517,LOC107732195,LOC107660271,LOC107740717,LOC107685450 non-coding downstream 14133 123616 ~ 127776 (-)
LOC111191692 NA non-coding downstream 87318 52894 ~ 54591 (-)
G323836 NA non-coding downstream 113591 28020 ~ 28318 (-)
G323911 NA non-coding upstream 5505 172941 ~ 196305 (-)
G323917 NA non-coding upstream 27965 195401 ~ 210415 (-)
lrrc63 NA other downstream 29872 103958 ~ 112037 (-)
nms nms other upstream 7538 174974 ~ 179325 (-)

Expression


Co-expression Network