Fish Transcriptome and Expression Database

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ornamental fish

trnal-caa_87

Basic Information

Item	Value
gene id	trnal-caa_87
gene name	NA
gene type	coding
species	mexican tetra (Astyanax mexicanus)
category of species	ornamental fish

Chromosome Information

Item	Value
chromosome id	NW_019172900.1
NCBI id	APWO02000129.1
chromosome length	294554
location	135342 ~ 135451 (-)
genome version	Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnal-caa_87
GTCAGgatggccgagcggtctaaggcgccagaCTCAAGTTCTGGTCTCCGAATGGAGgcgtgggttcaaatcccacttctgaca

Function

GO: NA

KEGG: NA

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
trnal-caa_87	True	84	tRNA	0.57	2	135342	135451

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
cnot11	cnot11,LOC106582250	coding	downstream	315	128837 ~ 135027 (-)
LOC103042938	NA	coding	downstream	35663	97566 ~ 99679 (-)
LOC111191691	NA	coding	downstream	47318	74756 ~ 88024 (-)
LOC103028530	NA	coding	downstream	61852	63043 ~ 73490 (-)
med4	med4,LOC107673119,LOC107709409,LOC107724027,LOC107601074,LOC107675337	coding	downstream	74258	55893 ~ 61084 (-)
tbc1d8	tbc1d8	coding	upstream	6458	141909 ~ 167436 (-)
edar	edar,LOC107566566	coding	upstream	81902	217353 ~ 271612 (-)
G323902	lcp1,LOC108439517,LOC107732195,LOC107660271,LOC107740717,LOC107685450	non-coding	downstream	7566	123616 ~ 127776 (-)
LOC111191692	NA	non-coding	downstream	80751	52894 ~ 54591 (-)
G323836	NA	non-coding	downstream	107024	28020 ~ 28318 (-)
G323904	rpl31,LOC102795706,LOC106575914,LOC105022559,LOC106582252,LOC106586486,LOC107740715	non-coding	upstream	549	136000 ~ 139374 (-)
G323906	NA	non-coding	upstream	4881	140332 ~ 147574 (-)
G323909	NA	non-coding	upstream	28458	163909 ~ 164575 (-)
G323911	NA	non-coding	upstream	37490	172941 ~ 196305 (-)
G323917	NA	non-coding	upstream	59950	195401 ~ 210415 (-)
lrrc63	NA	other	downstream	23305	103958 ~ 112037 (-)
nms	nms	other	upstream	39523	174974 ~ 179325 (-)

Expression

Co-expression Network

Homologous

species	gene id	symbol	gene type	chromosome	NCBI id	location
zebrafish (Danio rerio)	XLOC_011434	NA	non-coding	NC_007128.7	CM002901.2	23905801 ~ 23919315 (+)
grasscarp (Ctenopharyngodon idella)	CI01000313_01185861_01191042	PEX13	coding	CI01000313	null	1185861 ~ 1191829 (+)
eurasian perch (Perca fluviatilis)	trnal-caa_22	NA	misc	NC_053134.1	CM020931.1	13802093 ~ 13802203 (+)
tiger barb (Puntius tetrazona)	trnac-gca_20	NA	coding	NC_056709.1	CM032078.1	1110894 ~ 1110965 (-)