G51960 (glis1)


Basic Information

Item Value
gene id G51960
gene name glis1
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 13663401 ~ 13664114 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70092
TTGTTGGGCTTCTCTCCAGAGTGGACCCTCATGTGGATAAGCAGCTTGTAGCGAGCGTTGAATGGCTTGTAGCGGCGGATACATCCAGCCCAGAAGCAAGTGAAGTCCTCGCCTTTCCTCTGATCAATATGCACCTTTTCGATGTGCCTCACCAGCTCTTCCTGCTGGTCATATGCAGCACTGCAGTCGATCCATCGGCATATTTGCTTATCATTAAAAACGCTGGAGTCGTCCCGCTCCAGGGCTTGCAGGCCAGCCGGGCCTGAGACTCTGGGTCCAGGTGGAGGCTGCTGAGGCTGCTGCTGGTTGTGCAGGTGCAGCAGTGCACCTGTACCGGAGCCCATATTATACTGGTGCAGGTGGTACGGAGGAGGCATGGGGgtccgctgctgctgctgttgctgctgctgctgtccacGGTTGGGTGAAAGAAACTGATGGTGAAAAAGCTCCTCCTCAGACGGAGAGAAATCGTCCATTGGCTCCTGTTTCAAAACCGCGGATGGTCGCTGACCCCCAGAGTGCATGAGCAAACCGAGGCCGTCAGCTGGCCCAGGCTGCATGGAGCCCGGATCCTCACACGAAGATAcagaggatgaagaggaggaggatgaggatgaggagaGAGACAGCAGGCAGCAGGTGGAGGGTGAGACTGAGGGGTCCCGAGGGCTGGGAGCGGGTGCAGGCTTGATGGCAGGGTATCCACAGGtc

Function

symbol description
glis1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in negative regulation of transcription by RNA polymerase II and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription, DNA-templated. Predicted to be active in nucleus.

NR:

description
PREDICTED: zinc finger protein GLIS1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70092 True 714 TUCP 0.58 1 13663401 13664114

Neighbor

gene id symbol gene type direction distance location
dio1 dio1 coding downstream 65593 13594155 ~ 13597808 (-)
LOC103030626 LOC108439397,LOC107710923,LOC107548485,LOC107585821,LOC107657911 coding downstream 99913 13545691 ~ 13563488 (-)
fpgt NA coding downstream 130168 13528757 ~ 13533233 (-)
LOC103033588 tnni3k,LOC107550356,LOC107743849,LOC107657874,LOC107699804,LOC107710912 coding downstream 136521 13499464 ~ 13526880 (-)
LOC103033893 NA coding downstream 196140 13460464 ~ 13467261 (-)
LOC103026255 elovl8b,LOC103026255,LOC108442366,LOC107657928,LOC108265939,LOC107585829,LOC107699894 coding upstream 77594 13741708 ~ 13750155 (-)
mutyh mutyh,LOC103399401 coding upstream 87485 13751599 ~ 13759781 (-)
c6h1orf228 NA coding upstream 96555 13760669 ~ 13768994 (-)
LOC103024702 guk1b,LOC103024702,LOC107585833,LOC107758268,LOC107657930,LOC107750510,LOC108442369,LOC105895130,LOC105895024 coding upstream 106047 13770161 ~ 13785329 (-)
LOC103027869 LOC108442365 coding upstream 126419 13790533 ~ 13854271 (-)
G51958 NA non-coding downstream 23282 13639888 ~ 13640119 (-)
G51941 NA non-coding downstream 173202 13487919 ~ 13490199 (-)
G51932 NA non-coding downstream 228856 13433901 ~ 13434545 (-)
G51842 NA non-coding downstream 261158 13367425 ~ 13402243 (-)
G51919 NA non-coding downstream 296566 13364816 ~ 13366835 (-)
G51992 NA non-coding upstream 215285 13879399 ~ 13885559 (-)
G52024 NA non-coding upstream 348259 14012373 ~ 14014008 (-)
LOC111192619 LOC108442363 non-coding upstream 374226 14038340 ~ 14063185 (-)
G52064 NA non-coding upstream 434897 14099011 ~ 14100478 (-)
G52127 NA non-coding upstream 495662 14159776 ~ 14160951 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 70454 13565998 ~ 13592947 (-)
smim24 NA other downstream 339718 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 1781460 11831802 ~ 11881941 (-)
G51346 NA other downstream 2458978 11204054 ~ 11204423 (-)
G51187 kansl3,LOC107678435 other downstream 3346934 10313482 ~ 10316467 (-)
G52161 NA other upstream 744822 14408936 ~ 14411611 (-)
G52299 NA other upstream 1412182 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 2497526 16161640 ~ 16219847 (-)
G52493 NA other upstream 2518621 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 2562122 16226236 ~ 16227174 (-)

Expression


Co-expression Network