G52161


Basic Information

Item Value
gene id G52161
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 14408936 ~ 14411611 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70366
tattatattatttcccgtgtctgcgggtgctccggtttcctcccacagtccaaagaaatTAGTTCAGGCTAATTagatgtcggataaaaattgccccttaggtgtgagtgaatgtgtctgtgtgtctgtctgtgtctgtctgccctgtgatggattggcatcctgtccagggtgtatactgccttcagCCCGATGCCAgctggtatagactccagccaCCAAGCatcgacccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccgatat

Function

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase HERC4 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70366 True 621 TUCP 0.81 2 14408936 14411611

Neighbor

gene id symbol gene type direction distance location
LOC103032914 LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667 coding downstream 20877 14355158 ~ 14388059 (-)
sh3gl1 sh3gl1,sh3gl1b,LOC107700047,LOC107717567,LOC108265290 coding downstream 59932 14301143 ~ 14349004 (-)
LOC103033235 NA coding downstream 132273 14255068 ~ 14276663 (-)
cpox cpox,LOC102782768 coding downstream 187423 14211590 ~ 14221513 (-)
tmem47 tmem47 coding downstream 221869 14166669 ~ 14187067 (-)
LOC107197797 NA coding upstream 95123 14506734 ~ 14525266 (-)
LOC103032692 kcnd3,LOC107556323,LOC107669639,LOC107711847 coding upstream 148417 14560028 ~ 14773427 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding upstream 698661 15110272 ~ 15128265 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding upstream 883389 15295000 ~ 15355710 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding upstream 1507859 15919470 ~ 15973008 (-)
G52123 NA non-coding downstream 69656 14306209 ~ 14339280 (-)
G52130 NA non-coding downstream 155508 14251437 ~ 14253428 (-)
G52131 NA non-coding downstream 193074 14205118 ~ 14215862 (-)
G52132 NA non-coding downstream 193374 14202166 ~ 14215562 (-)
G52127 NA non-coding downstream 247985 14159776 ~ 14160951 (-)
G52194 rap1aa,LOC107594522,LOC101074250,LOC107679791,LOC107556321,LOC107751450,LOC107090729,LOC106952760 non-coding upstream 50325 14461936 ~ 14490015 (-)
G52217 NA non-coding upstream 109744 14521355 ~ 14566614 (-)
G52218 NA non-coding upstream 115608 14527219 ~ 14528579 (-)
G52215 NA non-coding upstream 143332 14554943 ~ 14561035 (-)
G52227 NA non-coding upstream 252661 14664272 ~ 14664828 (-)
G51960 glis1 other downstream 744822 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 815989 13565998 ~ 13592947 (-)
smim24 NA other downstream 1085253 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 2526995 11831802 ~ 11881941 (-)
G51346 NA other downstream 3204513 11204054 ~ 11204423 (-)
G52299 NA other upstream 664685 15076296 ~ 15084568 (-)
LOC103028883 LOC108430093 other upstream 1750029 16161640 ~ 16219847 (-)
G52493 NA other upstream 1771124 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 1814625 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 1932145 16343756 ~ 16356960 (-)

Expression


Co-expression Network